View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_5 (Length: 467)
Name: NF6053_low_5
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 49659961 - 49660413
Alignment:
| Q |
1 |
caacatcaaacacacaagaggggttagagacttgaaattagatcatgtaattatggtaagatggttctttcttttgtccttttcgttattgacccnnnnn |
100 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49659961 |
caacatcgaacatacaagaggggttagagacttgaaattagatcatgtaattatggtaagatggttctttcttttgtccttttcgttattgacccaaaaa |
49660060 |
T |
|
| Q |
101 |
nntctattagtcttcttagagttctatttctacacgttagttaccctcttttttaacaatcaacatccacaaaatcttttcctcttttcttcctttgtgt |
200 |
Q |
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|||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49660061 |
aatctaatagttttctttgagttctatttctacacgttagttaccctcttttttaacaatcaacatccacaaaatcttttcctcttttcttcctttgtgt |
49660160 |
T |
|
| Q |
201 |
tgtatgcatgtatgttctctcttgttatctatccttttctattttccattttttgctaaccatatgtcaaattgtcaccaaatgtttattctcnnnnnnn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49660161 |
tgtatgcatgtatgttctctcttgttatctatccttttctattttccattttttgctaaccatatgtcaaattgtcacctaatgtttattctcttttttc |
49660260 |
T |
|
| Q |
301 |
nnnnncatttcttatattgaaaacacaaaattataacttcctaattggaaataagttttattatttatttgaacatcaaaatacaaaaacactatcctat |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49660261 |
tttttcatttcttatattgaaaacacaaaattataacttcctaattggaaataagttttattatttatttgaacatcaaaatacaaaaacactaccctat |
49660360 |
T |
|
| Q |
401 |
gtgctatggtatgtatttatctttagatcaatgtcatttggatacacatactt |
453 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49660361 |
gtgctatggtatgtatttatcattagatcaatgtcatttggatacacatactt |
49660413 |
T |
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