View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_7 (Length: 451)
Name: NF6053_low_7
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 32192920 - 32193015
Alignment:
| Q |
176 |
ataatatttgaatacaaaagatgatgcaatcaccatttctcattaacattattttatttaattatccacatcaaaacattgtccattactcagttt |
271 |
Q |
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| T |
32192920 |
ataatatttgaatacaaaagatgatgcaatcaccatttctcattaaaattattttatttaattttccacatcaaaacattctccattactcagttt |
32193015 |
T |
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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 32194608 - 32194658
Alignment:
| Q |
273 |
taatgagctctctctcgatctaagtgtaggcatctatcaatttcaatttca |
323 |
Q |
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| T |
32194608 |
taatgagctctctcgtgatctaagtgtaggcatctatcaacttcaatttca |
32194658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 429
Target Start/End: Original strand, 32195233 - 32195267
Alignment:
| Q |
395 |
atataatagatgatgcaatcaccctttcttattat |
429 |
Q |
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| T |
32195233 |
atataatagatgatgcaatcaccctttcatattat |
32195267 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 21549190 - 21549233
Alignment:
| Q |
292 |
ctaagtgtaggcatctatcaatttcaatttcaatgttgtttgttt |
336 |
Q |
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| T |
21549190 |
ctaagtgtaggcatctatcaatttcaatttc-atgttgtttgttt |
21549233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 20361389 - 20361464
Alignment:
| Q |
273 |
taatgagctctctctcgatctaagtgtaggcatctatcaatttcaatttcaatgttgtttgtttcacttataaacaatctctt |
355 |
Q |
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| T |
20361389 |
taatgagctctgtagcggtctaagtgtaggcatctatcaatttc-------atgttgtttgtttcacctataaacaatctctt |
20361464 |
T |
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