View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6053_low_8 (Length: 448)
Name: NF6053_low_8
Description: NF6053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6053_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 51 - 432
Target Start/End: Complemental strand, 29946504 - 29946122
Alignment:
| Q |
51 |
attctatcgatggctactgattacgtaaaacagcgatttgttcaaattagtatattacataatagcactatagcgcctgcctatgtaactgctatttgac |
150 |
Q |
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| T |
29946504 |
attctatcgatggctactgattacataaaacagcgatttgttcaaattagtatgttacataatagcactatagcgcctgcctatgtaactgctatttggc |
29946405 |
T |
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| Q |
151 |
aacactttttattaatcccgtgttgcataataaaagtggtttgttcaaattatgttaagctatagccgctattttgacaacattgattcgaagtcgctgc |
250 |
Q |
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| T |
29946404 |
aacactttttattaatcccgtgttgcataataaaagtggtttgttcaaattatgttaagctatagccgctattttgacaacattgattcgaagtcgctgc |
29946305 |
T |
|
| Q |
251 |
agttattttcttttaactttgtatcagtgtaggatatgt-ttttatatattgctgatttgagttccgaatttgtagtgttccacagctgaagactgtcgt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29946304 |
agttattttcttttaactttgtatcagtgtaggatatgttttttatatattgctgatttgagttcaaaatttgtagtgttccacagctgaagactgtcgt |
29946205 |
T |
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| Q |
350 |
tcagttacttgcaaatatggaaagcagccagcttagttcactatcccgaacccatgttcttgagaaggtatggatatgatgat |
432 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29946204 |
tcagttacttgcaaatatggaaagtagccagcttagttcactatcccgaacccatgttcttgagaaggtatggatatgatgat |
29946122 |
T |
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