View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6054_high_2 (Length: 438)
Name: NF6054_high_2
Description: NF6054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6054_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 26203459 - 26203867
Alignment:
| Q |
19 |
gatgtttcagtgcgggatttcgggggaggaggtgtgagtagtaaaagcgcatcttggaaaacgacatcgaatagggatgaagaatcggcgtcgttttgag |
118 |
Q |
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| T |
26203459 |
gatgtttcagtgcgggatttcgggggaggaggtgtgagtagtaaaagcgcatcttggaaaacgacatcgaatagggatgaagaatcggcgtcgttttgag |
26203558 |
T |
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| Q |
119 |
aaaaaggtgagtccatgagttcgaggaaatgagtgtcgcaatggggacagagtagaggagagggggtgtgagaagtagttaaagaaacgctcatgtcaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
26203559 |
aaaaaggtgagtccatgagttcgaggaaatgagtgtcgcaatggggacagagtagaggagagggggtgagagaagtagttaaagaaacactcatgtcaca |
26203658 |
T |
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| Q |
219 |
ttcgtggcaccagtatgttttcagttcgggttccgccaccgagatcgccgtcgtcatggtggtggctggtggagttagttggagttgaattgannnnnnn |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26203659 |
ttcgtggcaccagtatgttttcagttcgggttccgccaccgagatcgccgtcgtcatggtggtggctggtggagttagtt-gagttgaattgattttttt |
26203757 |
T |
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| Q |
319 |
atttgagtgtttggtatgcgtcggtgatgtggtgagtctataaaatggaaagt-gggggttaagaaagagattaagtgggacccacacgcacccaacctc |
417 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26203758 |
atttgagtgcttggtatgcgtcggtgatgtggtgagtgtataaaatggaaagtggggggttaagaaagagattaagtgggacccacacgcacccaacctc |
26203857 |
T |
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| Q |
418 |
ttcacttcat |
427 |
Q |
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| T |
26203858 |
ttcacttcat |
26203867 |
T |
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