View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6054_high_3 (Length: 385)
Name: NF6054_high_3
Description: NF6054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6054_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 35561750 - 35561395
Alignment:
| Q |
11 |
cacagattgaaaatctaatctaactgaatcagatttatagctctttaaactttaattaattgattaaaagagaataaa-ccattttgcaatatttgtttt |
109 |
Q |
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| T |
35561750 |
cacaaattgaaaatctaatctaactgaatcagatttatagctctt-aaactttaattaattgattaaaagagaataaaaccattttgcaatatttgtttt |
35561652 |
T |
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| Q |
110 |
tattttgtggtcaacaccctgaactgaaactccactgaataaattgcgttacgtaattccaattgatattaagagcacgtgctgctgattatgtgtcaca |
209 |
Q |
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| T |
35561651 |
tattttgtggtcaacaccctgaactgaaactccactgaataaattgcgttacgtaattccaattgatattaagagcacgtgctgctgattatgtgtcaca |
35561552 |
T |
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| Q |
210 |
taaatgttaccaaattataattatcttctaaagaattgtttggccatcatccaatttgatactttgtttaaggtatagctccaattatagtttcgtgcca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35561551 |
taaatgttaccaaattataattatcttctaaagaattgtttggccatcatccaatttgatactttgtttaaggtatagctccaattatagtttcgtgcca |
35561452 |
T |
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| Q |
310 |
ctctctaatttgatacttatcatgtcattaatcttttaatttgaccattaaaccgtt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35561451 |
ctctctaatttgatacttatcatgtcattaatcttttaattttaccattaaaccgtt |
35561395 |
T |
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