View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6054_low_3 (Length: 385)
Name: NF6054_low_3
Description: NF6054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6054_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 35561750 - 35561395
Alignment:
| Q |
11 |
cacagattgaaaatctaatctaactgaatcagatttatagctctttaaactttaattaattgattaaaagagaataaa-ccattttgcaatatttgtttt |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35561750 |
cacaaattgaaaatctaatctaactgaatcagatttatagctctt-aaactttaattaattgattaaaagagaataaaaccattttgcaatatttgtttt |
35561652 |
T |
|
| Q |
110 |
tattttgtggtcaacaccctgaactgaaactccactgaataaattgcgttacgtaattccaattgatattaagagcacgtgctgctgattatgtgtcaca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35561651 |
tattttgtggtcaacaccctgaactgaaactccactgaataaattgcgttacgtaattccaattgatattaagagcacgtgctgctgattatgtgtcaca |
35561552 |
T |
|
| Q |
210 |
taaatgttaccaaattataattatcttctaaagaattgtttggccatcatccaatttgatactttgtttaaggtatagctccaattatagtttcgtgcca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35561551 |
taaatgttaccaaattataattatcttctaaagaattgtttggccatcatccaatttgatactttgtttaaggtatagctccaattatagtttcgtgcca |
35561452 |
T |
|
| Q |
310 |
ctctctaatttgatacttatcatgtcattaatcttttaatttgaccattaaaccgtt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35561451 |
ctctctaatttgatacttatcatgtcattaatcttttaattttaccattaaaccgtt |
35561395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University