View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6054_low_7 (Length: 270)

Name: NF6054_low_7
Description: NF6054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6054_low_7
NF6054_low_7
[»] chr4 (2 HSPs)
chr4 (140-270)||(19021608-19021738)
chr4 (3-56)||(19021471-19021524)
[»] chr6 (3 HSPs)
chr6 (179-257)||(10801058-10801136)
chr6 (140-257)||(4020678-4020792)
chr6 (140-257)||(34654916-34655030)
[»] chr7 (2 HSPs)
chr7 (140-257)||(5050354-5050468)
chr7 (140-257)||(48347539-48347653)
[»] chr5 (2 HSPs)
chr5 (140-257)||(29980021-29980135)
chr5 (140-257)||(2965993-2966107)
[»] chr3 (3 HSPs)
chr3 (140-257)||(9570992-9571106)
chr3 (200-257)||(12831868-12831925)
chr3 (202-257)||(4503195-4503250)
[»] chr2 (2 HSPs)
chr2 (140-257)||(34835254-34835368)
chr2 (140-257)||(2163694-2163808)
[»] chr1 (1 HSPs)
chr1 (140-257)||(39053780-39053894)
[»] scaffold0045 (1 HSPs)
scaffold0045 (200-257)||(3248-3305)
[»] scaffold0012 (1 HSPs)
scaffold0012 (176-257)||(205684-205765)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 140 - 270
Target Start/End: Original strand, 19021608 - 19021738
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  19021608 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactctatgtgactatgaatca 19021707  T
Q  240 tatcaacaatatcaacaaagttcttccatag 270  Q
    |||||||||||||||||||||||||||||||    
T  19021708 tatcaacaatatcaacaaagttcttccatag 19021738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 19021471 - 19021524
Alignment:
Q  3 taattcgtcagtcgaggcttgttctcccatcaaacaagtccgaacctgtaaata 56  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  19021471 taattcgtcagtcgatgcttgttctcccatcgaacaagtccgaacctgtaaata 19021524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 10801058 - 10801136
Alignment:
Q  179 aaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 257  Q
    |||||||| ||||  ||||  |||||||||||| ||||| |||||||  || |||||||||||||||||||||||||||    
T  10801058 aaacgaaatcatggctgatcatggttataacaacttctacactccattcgagtatgaatcatatcaacaatatcaacaa 10801136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 4020678 - 4020792
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  4020678 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 4020774  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  4020775 tatcaacagtatcaacaa 4020792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 34655030 - 34654916
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  34655030 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 34654934  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  34654933 tatcaacagtatcaacaa 34654916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 5050354 - 5050468
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  5050354 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 5050450  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  5050451 tatcaacagtatcaacaa 5050468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 48347539 - 48347653
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| | || ||||  ||||  |||||||||||| ||||| |||||||  || |||||||||    
T  48347539 ttcttgttagttatatccgtttcagattctctacat---aaatgcaatcatggctgatcatggttataacaacttctacactccattggagtatgaatca 48347635  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  48347636 tatcaacagtatcaacaa 48347653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 29980135 - 29980021
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| | || ||||  ||||  |||||||||||| ||||| |||||||  || |||||||||    
T  29980135 ttcttgttagttatatccgtttcagattctctacat---aaatgcaatcatggctgatcatggttataacaacttctacactccattggagtatgaatca 29980039  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  29980038 tatcaacagtatcaacaa 29980021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 2966107 - 2965993
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| | || ||||  ||||  |||||||||||| ||||| ||| |||  || |||||||||    
T  2966107 ttcttgttagttatatccgtttcagattctctacat---aaatgcaatcatggctgatcatggttataacaacttctacactgcattggagtatgaatca 2966011  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  2966010 tatcaacagtatcaacaa 2965993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 9570992 - 9571106
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  9570992 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 9571088  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  9571089 tatcaacagtatcaacaa 9571106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 12831925 - 12831868
Alignment:
Q  200 tggttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 257  Q
    |||||||||||| || |||| ||||||||| ||||||||||||| ||| |||||||||    
T  12831925 tggttataacaacttttatattccatatgagtatgaatcatatccacattatcaacaa 12831868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 4503250 - 4503195
Alignment:
Q  202 gttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 257  Q
    |||||||||| ||||| |||||||  || ||||||||||||||||| |||||||||    
T  4503250 gttataacaacttctacactccattcgagtatgaatcatatcaacagtatcaacaa 4503195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 34835254 - 34835368
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| |||| ||||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  34835254 ttcttgttagttatatccgtttcagattctctacat---aaatgaaatcatggctgatcatggttataacaacttctacactccactggaatatgaatca 34835350  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  34835351 tatcaacagtatcaacaa 34835368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 2163808 - 2163694
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| ||||  |||  ||||  |||||||||||| ||||| ||||||   || |||||||||    
T  2163808 ttcttgttagttatatccgtttcagattctctacat---aaatgaaattatggttgatcatggttataacaacttctacactccactggaatatgaatca 2163712  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  2163711 tatcaacagtatcaacaa 2163694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 39053780 - 39053894
Alignment:
Q  140 ttcttgttagttatatatgtttcatattctctccatcataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatca 239  Q
    ||||||||||||||||  |||||| ||||||| |||   ||| | || ||||  ||||  |||||||||||| ||||| |||||||  || |||||||||    
T  39053780 ttcttgttagttatatccgtttcagattctctacat---aaatgcaatcatggctgatcatggttataacaacttctacactccattggagtatgaatca 39053876  T
Q  240 tatcaacaatatcaacaa 257  Q
    |||||||| |||||||||    
T  39053877 tatcaacagtatcaacaa 39053894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 3248 - 3305
Alignment:
Q  200 tggttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 257  Q
    |||||||||||| ||||| |||||||  || ||||||||||||||| | |||||||||    
T  3248 tggttataacaacttctacactccattggagtatgaatcatatcaatagtatcaacaa 3305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 205765 - 205684
Alignment:
Q  176 cataaacgaaaccatgcatgattgtggttataacaatttctatactccatatgactatgaatcatatcaacaatatcaacaa 257  Q
    ||||||||||| |||| |||||  |||||| ||||| ||||| |||||||   | ||||| ||||||||||| |||||||||    
T  205765 cataaacgaaatcatggatgatcatggttagaacaacttctacactccattcaagtatgagtcatatcaacagtatcaacaa 205684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University