View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6057_high_2 (Length: 310)

Name: NF6057_high_2
Description: NF6057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6057_high_2
NF6057_high_2
[»] chr1 (8 HSPs)
chr1 (16-292)||(2797371-2797647)
chr1 (16-292)||(6838566-6838842)
chr1 (16-157)||(8977478-8977619)
chr1 (173-292)||(8977307-8977426)
chr1 (39-169)||(28600536-28600666)
chr1 (18-134)||(6384839-6384955)
chr1 (171-279)||(28600390-28600498)
chr1 (180-280)||(6385041-6385139)
[»] chr8 (1 HSPs)
chr8 (16-292)||(32525737-32526013)
[»] chr3 (2 HSPs)
chr3 (46-134)||(2802795-2802883)
chr3 (174-292)||(2802958-2803077)
[»] chr5 (2 HSPs)
chr5 (55-172)||(20083249-20083366)
chr5 (168-292)||(20083094-20083217)
[»] chr2 (2 HSPs)
chr2 (16-157)||(13812229-13812373)
chr2 (171-238)||(13812423-13812490)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 2797647 - 2797371
Alignment:
Q  16 atgaagcaaccatcactactttggagaataccaaagatctctcaaaaatttctttggcagaattgcttaatgcattgaaggcacaagaacagagaagatt 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2797647 atgaagcaaccatcactactttggagaataccaaagatttctcaaaaatttctttggcagaattgcttaatgcattgaaggcactagaacagagaagatt 2797548  T
Q  116 gatgagagaggaaacaacacttgaaggagcattagcagccaaacagcagaatgtgggctcaacatcagccaatgcaacagaaaataatgtaattcgaaga 215  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2797547 gatgagagaggaaacaacacttgaaggagcattagcagccaagcagcataatgtgggctcaacatcagccaatgcaacagaaaagaatgtaattcgaaga 2797448  T
Q  216 aaatcttatcctccatgtcaacactgtggaaagaaatgtcatccaccctttagatgttggagaaggcctaatgctaa 292  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  2797447 aaatcttatcctccatgtcaacactgtggaaagaaaggtcatccaccctttagatgttggagaagacctgatgctaa 2797371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 6838842 - 6838566
Alignment:
Q  16 atgaagcaaccatcactactttggagaataccaaagatctctcaaaaatttctttggcagaattgcttaatgcattgaaggcacaagaacagagaagatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6838842 atgaagcaaccatcactactttggagaataccaaagatttctcaaaaatttcttttgcagaattgcttaatgcattgaaggcacaagaacagagaagatt 6838743  T
Q  116 gatgagagaggaaacaacacttgaaggagcattagcagccaaacagcagaatgtgggctcaacatcagccaatgcaacagaaaataatgtaattcgaaga 215  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  6838742 gatgagagaggaaacaacacttgaaggagcattagcagccatgtagcagaatgtgggttcaacatcagccaatgcaacagaaaagaatgcaattcgaaga 6838643  T
Q  216 aaatcttatcctccatgtcaacactgtggaaagaaatgtcatccaccctttagatgttggagaaggcctaatgctaa 292  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  6838642 aaatcttatcctccacgtcaacactgtggaaagaaaggtcatccaccctttagatgttggagaagacctgatgctaa 6838566  T

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Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 8977619 - 8977478
Alignment:
Q  16 atgaagcaaccatcactactttggagaataccaaagatctctcaaaaatttctttggcagaattgcttaatgcattgaaggcacaagaacagagaagatt 115  Q
    |||||| ||||||||||||||| |||||||||| |||| ||| |||||  |||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  8977619 atgaagtaaccatcactactttagagaataccagagatttctaaaaaaaatctttggcagaattgcttaatgcattgaaggggcaagaacatagaagatt 8977520  T
Q  116 gatgagagaggaaacaacacttgaaggagcattagcagccaa 157  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  8977519 gatgaaagaagaaacaacacttgaaggagcattagcagccaa 8977478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 8977426 - 8977307
Alignment:
Q  173 ctcaacatcagccaatgcaacagaaaataatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaatgtcatccaccctttagatgt 272  Q
    ||||| ||||||||||||||||||||| |||| ||||| ||||||||||||| | |||| |||||| |||||||| ||| ||||||||||||||||||||    
T  8977426 ctcaaaatcagccaatgcaacagaaaagaatgaaattcaaagaaaatcttatacgccatttcaacattgtggaaaaaaaggtcatccaccctttagatgt 8977327  T
Q  273 tggagaaggcctaatgctaa 292  Q
    |||||||| ||| |||||||    
T  8977326 tggagaagacctgatgctaa 8977307  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 28600666 - 28600536
Alignment:
Q  39 gagaataccaaagatctctcaaaaatttctttggcagaattgcttaatgcattgaaggcacaagaacagagaagattgatgagagaggaaacaacacttg 138  Q
    ||||||||||| ||| | |||||||| ||||||| ||||||| ||||  |||||||||  |||||||| |||||||||||||||||||| ||||||        
T  28600666 gagaataccaaggatttttcaaaaatatctttggaagaattgattaaaccattgaaggtgcaagaacatagaagattgatgagagaggacacaacaacga 28600567  T
Q  139 aaggagcattagcagccaaacagcagaatgt 169  Q
    ||||||| | ||||||||| ||||| |||||    
T  28600566 aaggagcttcagcagccaatcagcaaaatgt 28600536  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 6384839 - 6384955
Alignment:
Q  18 gaagcaaccatcactactttggagaataccaaagatctctcaaaaatttctttggcagaattgcttaatgcattgaaggcacaagaacagagaagattga 117  Q
    |||| |||||||||||| ||  ||||||||||  || ||||||||| ||||||| || ||| |||||||||||||||| |||||||| ||| ||||   |    
T  6384839 gaagtaaccatcactacgtttaagaataccaagaatttctcaaaaagttctttgacaaaatagcttaatgcattgaagacacaagaatagataagacgta 6384938  T
Q  118 tgagagaggaaacaaca 134  Q
    |||||||||||||||||    
T  6384939 tgagagaggaaacaaca 6384955  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 28600498 - 28600390
Alignment:
Q  171 ggctcaacatcagccaatgcaacagaaaataatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaatgtcatccaccctttagat 270  Q
    |||||||||||||| || |||| |||||| |||| |||| |||||||||||||||| || |  ||| | ||||||||||||||||||||| | |||| ||    
T  28600498 ggctcaacatcagcgaaagcaaaagaaaagaatgaaatttgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatccatcatttaaat 28600399  T
Q  271 gttggagaa 279  Q
    |||||||||    
T  28600398 gttggagaa 28600390  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 6385041 - 6385139
Alignment:
Q  180 tcagccaatgcaacagaaaataatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaatgtcatccaccctttagatgttggagaa 279  Q
    |||||||||| || ||||||||||| |||||||||||||||||  | ||| |||| ||||  |||||||||| |||| ||||| |||||| |||||||||    
T  6385041 tcagccaatgtaaaagaaaataatgaaattcgaagaaaatcttcacttccttgtctacac--tggaaagaaaggtcacccaccatttagaggttggagaa 6385138  T

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Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 32525737 - 32526013
Alignment:
Q  16 atgaagcaaccatcactactttggagaataccaaagatctctcaaaaatttctttggcagaattgcttaatgcattgaaggcacaagaacagagaagatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  32525737 atgaagcaaccatcactactttggagaataccaaagatttctcaaaaatttcttttgcagaattgcttaatgcattgaaggcacaagaacagaggagatt 32525836  T
Q  116 gatgagagaggaaacaacacttgaaggagcattagcagccaaacagcagaatgtgggctcaacatcagccaatgcaacagaaaataatgtaattcgaaga 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  32525837 gatgagagaggaaacaacacttgaaggagcattagcagccaagcagcagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaaga 32525936  T
Q  216 aaatcttatcctccatgtcaacactgtggaaagaaatgtcatccaccctttagatgttggagaaggcctaatgctaa 292  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||| |||||||    
T  32525937 aaatcttatcctccatgtcaacactatggaaagaaaggtcatccacccttaagatgttggagaagacctgatgctaa 32526013  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 2802795 - 2802883
Alignment:
Q  46 ccaaagatctctcaaaaatttctttggcagaattgcttaatgcattgaaggcacaagaacagagaagattgatgagagaggaaacaaca 134  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||||||||||||| ||||||    
T  2802795 ccaaggatttctcaaaaatttctttggtagaattgcttaatgcattgaaggcgcaagaacatggaagattgatgagagaggacacaaca 2802883  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 292
Target Start/End: Original strand, 2802958 - 2803077
Alignment:
Q  174 tcaacatcagccaatgcaacaga-aaataatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaatgtcatccaccctttagatgt 272  Q
    ||||||||||||||||||| | | ||| |||| ||||||| ||||||||||||| || |||||||| |||||||||||| ||||| |||| |||| | |     
T  2802958 tcaacatcagccaatgcaaaacataaagaatgaaattcgatgaaaatcttatccaccttgtcaacattgtggaaagaaaggtcattcaccatttataggg 2803057  T
Q  273 tggagaaggcctaatgctaa 292  Q
    |||||||| ||| |||||||    
T  2803058 tggagaagacctgatgctaa 2803077  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 20083366 - 20083249
Alignment:
Q  55 tctcaaaaatttctttggcagaattgcttaatgcattgaaggcacaagaacagagaagattgatgagagaggaaacaacacttgaaggagcattagcagc 154  Q
    |||||| | ||||||||  | ||||||||| |||||| ||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  20083366 tctcaatattttctttgaaataattgcttattgcattaaaggcgcaagaagagagaagattaatgagagaggaaacaacatttgaaggagcattagcatc 20083267  T
Q  155 caaacagcagaatgtggg 172  Q
    ||| ||||  ||||||||    
T  20083266 caagcagccaaatgtggg 20083249  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 20083217 - 20083094
Alignment:
Q  168 gtgggctcaacatcagccaatgcaacagaaaataatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaatgtcatccacccttta 267  Q
    ||||| || |||||||||| | ||| |||||| |||| |||||||||||| | | ||||||| ||| ||||||| || |||||| || || |||||||||    
T  20083217 gtgggatcgacatcagccactacaagagaaaagaatgaaattcgaagaaattgt-atcctccctgttaacactgagggaagaaaggtaattcacccttta 20083119  T
Q  268 gatgttggagaaggcctaatgctaa 292  Q
    |||||||| || | | |||||||||    
T  20083118 gatgttggggatgacataatgctaa 20083094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 13812229 - 13812373
Alignment:
Q  16 atgaagcaaccatcactactttggagaataccaaagatctctcaaaaatttctttggcagaattgcttaa----tgcattgaaggcacaagaacagagaa 111  Q
    |||||||||||| || ||||| |||||||| ||| ||| | |||||||||||||| ||| ||||||||||    |||||||||| | |||||||| ||||    
T  13812229 atgaagcaaccaacattactt-ggagaatatcaaggatttttcaaaaatttctttcgcaaaattgcttaattaatgcattgaagtcgcaagaacaaagaa 13812327  T
Q  112 gattgatgagagaggaaacaacacttgaaggagcattagcagccaa 157  Q
    || | ||||||||||| ||| ||  ||||||| | ||||| |||||    
T  13812328 gactaatgagagaggacacaccagctgaaggaaccttagcggccaa 13812373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 13812423 - 13812490
Alignment:
Q  171 ggctcaacatcagccaatgcaacagaaaataatgtaattcgaagaaaatcttatcctccatgtcaaca 238  Q
    |||||||||  ||||||||||| |||||| |||| ||||| || |||||||||||| || ||||||||    
T  13812423 ggctcaacactagccaatgcaaaagaaaagaatgaaattcaaaaaaaatcttatccgccttgtcaaca 13812490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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