View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6057_high_3 (Length: 262)
Name: NF6057_high_3
Description: NF6057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6057_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 4904181 - 4904415
Alignment:
| Q |
19 |
tctagatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctcgtcgcagaatcctattaaag |
118 |
Q |
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| T |
4904181 |
tctagatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctcgtcgcagaatcctattaaag |
4904280 |
T |
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| Q |
119 |
atatcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgccaaatctaagtgtcatcctctccaatgctactggata |
218 |
Q |
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| T |
4904281 |
atatcaaattagggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgcccaatctaagtgtcatcctctccaatgctactggata |
4904380 |
T |
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| Q |
219 |
ctcattttcaccattatgttttagataacctttgt |
253 |
Q |
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| T |
4904381 |
ctcattttcaccattatgtttgagataacctttgt |
4904415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 253
Target Start/End: Original strand, 4908125 - 4908339
Alignment:
| Q |
39 |
gtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctcgtcgcagaatcctattaaagatatcaaattcgggtgatga |
138 |
Q |
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| T |
4908125 |
gtgatcatagagagagccattggacatgtactcatacacaagaattttctcatacttgtggtcacagaatcctataaaagacgtcaaatttgggtgatga |
4908224 |
T |
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| Q |
139 |
agttggctgtggagttcaattaccttcttgaacatccaatcgccaaatctaagtgtcatcctctccaatgctactggatactcattttcaccattatgtt |
238 |
Q |
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| T |
4908225 |
agctggcagttgagttcaatttccttcttgaacttccattcattaaatatatgtatcatccgtttcactgctattggataatcagtttcaccattatgtt |
4908324 |
T |
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| Q |
239 |
ttagataacctttgt |
253 |
Q |
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| T |
4908325 |
tgagataacctttgt |
4908339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 5822140 - 5821914
Alignment:
| Q |
27 |
ccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctcgtcgcagaatcctattaaagatatcaaa |
126 |
Q |
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| T |
5822140 |
ccttgaacgtaactgatcatacaaagatccatttaacatgtactcatacacaagaattttctcatctttatgatcacagaatcctataaaagacctcaaa |
5822041 |
T |
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| Q |
127 |
ttcgggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgccaaatctaagtgtcatcctctccaatgctactggatactcatttt |
226 |
Q |
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| T |
5822040 |
ttcgggtgatgaagcttactgtggagttcaatttccttcttgaacttccattcgtcggataaatttctcatccgcttcacttctattggatactcagttt |
5821941 |
T |
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| Q |
227 |
caccattatgttttagataacctttgt |
253 |
Q |
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| T |
5821940 |
caccactatgtttgagataacctttgt |
5821914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 4921863 - 4921711
Alignment:
| Q |
25 |
tcccttgaacataagtgatcatagagagaaccattgaacatgtactc------atacactataattttctcatctttctcgtcgcagaatcctattaaag |
118 |
Q |
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||||||||||||||||||||| |||||| ||||||| ||| | || |||||| | ||||||||||| ||| | ||| || |||||||| |||| |
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| T |
4921863 |
tcccttgaacataagtgatcacggagagagccattgaccatttcatcttttttatacacgagaattttctcatttttttggtcacaaaatcctatcaaag |
4921764 |
T |
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| Q |
119 |
atatcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaac |
171 |
Q |
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| T |
4921763 |
atatcaaatttggatgacaaatctggcagtggagttcaatttcattcttgaac |
4921711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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