View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6057_low_1 (Length: 412)
Name: NF6057_low_1
Description: NF6057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6057_low_1 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 26842004 - 26841938
Alignment:
| Q |
122 |
tgaagcaccacaaatcaacacaaccaaaaaataacctacgagctcctcaacaaccaccaccccatac |
188 |
Q |
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| T |
26842004 |
tgaaacaccacaaatcaacacaaccaaaaaacaacctacgagctcctcaacaaccaccaccccatac |
26841938 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 15050069 - 15050003
Alignment:
| Q |
123 |
gaagcaccacaaatcaacacaaccaaaaaa-taacctacgagctcctcaacaaccaccaccccatac |
188 |
Q |
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| T |
15050069 |
gaagcaccacaaaccaacatagccaaaaaaataacctacgaactcctcaacaaccaccaacccatac |
15050003 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 26331089 - 26331039
Alignment:
| Q |
123 |
gaagcaccacaaatcaacacaaccaaaaaataacctacgagctcctcaaca |
173 |
Q |
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| T |
26331089 |
gaagcaccacaaaccaacacaactaaaaagcaacatacgagctcctcaaca |
26331039 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 40900359 - 40900405
Alignment:
| Q |
127 |
caccacaaatcaacacaaccaaaaaataacctacgagctcctcaaca |
173 |
Q |
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| T |
40900359 |
caccacaaacaaacacaaccaaaaaacaacttacgagctcctcaaca |
40900405 |
T |
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Target: scaffold0092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 23347 - 23396
Alignment:
| Q |
124 |
aagcaccacaaatcaacacaaccaaaaaataacctacgagctcctcaaca |
173 |
Q |
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|||||||||||| |||| ||||||||| |||||||||||||||||||| |
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| T |
23347 |
aagcaccacaaacgaacataaccaaaaaccaacctacgagctcctcaaca |
23396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 42677600 - 42677551
Alignment:
| Q |
124 |
aagcaccacaaatcaacacaaccaaaaaataacctacgagctcctcaaca |
173 |
Q |
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|||||||||||| ||||||||||||||| ||| ||||||||| |||||| |
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| T |
42677600 |
aagcaccacaaaccaacacaaccaaaaatcaacatacgagctcttcaaca |
42677551 |
T |
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