View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6059_high_2 (Length: 615)
Name: NF6059_high_2
Description: NF6059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6059_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 372 - 549
Target Start/End: Original strand, 43285680 - 43285859
Alignment:
| Q |
372 |
cttcataaattttct--actaaaaataattttggttagggcatgatgacattaaatattggtatatcttgtagttaagatacaaacttttgtttactaaa |
469 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43285680 |
cttcataaattttctctactaaaaataattttggttagggcatgatgacattaaatattggtatatcttgtaattaagatacaaacttttgtttactaaa |
43285779 |
T |
|
| Q |
470 |
ttgtatagtctagtctattttattagacctaatctgaaatgattattaaagcttatttccattggttctacactagatgc |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43285780 |
ttgtatagtctagtctattttattagacctaatctaaaatgattattaaagcttatttccattggttctacactagatgc |
43285859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 43285418 - 43285481
Alignment:
| Q |
19 |
gttttgtctttgacatgggggtggcagtgaggcctcacgtgggtatatctgacaccaaggcatg |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43285418 |
gttttgtctttgacatgggggtggcagtgaggcctcacgtgggtatatctgacaccaaggcatg |
43285481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 43285604 - 43285645
Alignment:
| Q |
205 |
ggatatgcacgagggggtttatatttatcatcattatatact |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43285604 |
ggatatgcacgagggggtttatatttatcatcattatatact |
43285645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 600
Target Start/End: Original strand, 43285856 - 43285884
Alignment:
| Q |
572 |
atgctctttcttctttggatatataacat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43285856 |
atgctctttcttctttggatatataacat |
43285884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University