View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6059_high_4 (Length: 370)

Name: NF6059_high_4
Description: NF6059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6059_high_4
NF6059_high_4
[»] chr3 (7 HSPs)
chr3 (1-353)||(32343189-32343541)
chr3 (143-202)||(35990526-35990585)
chr3 (144-201)||(47542535-47542592)
chr3 (153-202)||(33160483-33160532)
chr3 (140-205)||(53791950-53792015)
chr3 (144-200)||(18268007-18268063)
chr3 (146-198)||(21768609-21768661)
[»] chr8 (2 HSPs)
chr8 (137-201)||(6501495-6501559)
chr8 (142-202)||(33697141-33697201)
[»] chr4 (1 HSPs)
chr4 (138-209)||(3587912-3587983)
[»] chr7 (1 HSPs)
chr7 (143-201)||(46179911-46179969)
[»] chr5 (3 HSPs)
chr5 (136-193)||(26207999-26208057)
chr5 (144-201)||(16315873-16315930)
chr5 (161-193)||(4206334-4206366)
[»] scaffold0205 (1 HSPs)
scaffold0205 (144-193)||(21424-21473)
[»] chr6 (1 HSPs)
chr6 (161-206)||(11779395-11779440)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 32343189 - 32343541
Alignment:
Q  1 atattcgtcagcatctggtcgtgccccaaaactgatggaccaaataccactcctccctgttaccatagaacattataataaataaggcgtagcattctat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32343189 atattcgtcagcatctggtcgttccccaaaactgatggaccaaataccactcctccctgttaccatagaacattataataaataaggcgtagcattctat 32343288  T
Q  101 gtagcatcgatacttcacattgattgcgtgtctctagtgtctgacaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32343289 gtagcatcgatacttcacattgattgcgtgtctctagtgtctgacaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgt 32343388  T
Q  201 cgtgtttagtgtccgtatctatgttagggtttcataggtaatagttaacattatgatgatcattgaactttgtaaaatatgtataggttagaaaaaagct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32343389 cgtgtttagtgtccgtatctatgttagggtttcataggtaatagttaacattatgatgatcattgaactttgtaaaatatgtataggttagaaaaaagct 32343488  T
Q  301 tacaagaatatgagatacaagagaggtttgacctagtggcctgagacaagcat 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32343489 tacaagaatatgagatacaagagaggtttgacctagtggcctgagacaagcat 32343541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 35990526 - 35990585
Alignment:
Q  143 gacaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgtcg 202  Q
    ||||| || |||||||| ||||||||  || |||||||||||||||||||||||||||||    
T  35990526 gacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcg 35990585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 47542592 - 47542535
Alignment:
Q  144 acaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgtc 201  Q
    ||||||| |||||||  |||||||||||| || ||||||||||||||||| |||||||    
T  47542592 acaccgacacatgtgattacattcaaatagttcattttctcaaattattaccagtgtc 47542535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 33160532 - 33160483
Alignment:
Q  153 catgtggctacattcaaatactttattttctcaaattattatcagtgtcg 202  Q
    ||||||||||||||||||   |||||||||||||| ||||||| ||||||    
T  33160532 catgtggctacattcaaaggatttattttctcaaaatattatcggtgtcg 33160483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 53791950 - 53792015
Alignment:
Q  140 tctgacaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgtcgtgt 205  Q
    ||||||||||| |||||||| ||||||||| || |   ||||||||||||||||| |||| |||||    
T  53791950 tctgacaccgacacatgtggttacattcaattattcctttttctcaaattattattagtgccgtgt 53792015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 18268007 - 18268063
Alignment:
Q  144 acaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgt 200  Q
    ||||||| |||||||  ||| ||||| || || ||||||||||||||||||||||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgt 18268063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 21768661 - 21768609
Alignment:
Q  146 accgatacatgtggctacattcaaatactttattttctcaaattattatcagt 198  Q
    ||||| |||||||| ||| |||||||| || ||||||||||||||||| ||||    
T  21768661 accgacacatgtggttacgttcaaataattcattttctcaaattattaccagt 21768609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 6501559 - 6501495
Alignment:
Q  137 gtgtctgacaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgtc 201  Q
    |||||||||||||| |||||||| |||||| || || || ||| ||||||||||||| |||||||    
T  6501559 gtgtctgacaccgacacatgtggttacatttaattatttcattctctcaaattattaccagtgtc 6501495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 33697141 - 33697201
Alignment:
Q  142 tgacaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgtcg 202  Q
    ||||||||| || | ||| || |||||| || ||||||||||||||||||||||| |||||    
T  33697141 tgacaccgacacgtatggttatattcaattattttattttctcaaattattatcaatgtcg 33697201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 3587983 - 3587912
Alignment:
Q  138 tgtctgacaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgtcgtgtttag 209  Q
    |||||||||  || |||||||| |||||||||||| || | ||||||||||||||  | |||||||||||||    
T  3587983 tgtctgacatggacacatgtggttacattcaaatatttcactttctcaaattattgccggtgtcgtgtttag 3587912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 46179911 - 46179969
Alignment:
Q  143 gacaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgtc 201  Q
    |||||||| |||||||  || |||||| || ||||||||||||| ||||||||||||||    
T  46179911 gacaccgacacatgtgattatattcaattaatttattttctcaacttattatcagtgtc 46179969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 26207999 - 26208057
Alignment:
Q  136 agtgtctgacaccgatacatgtggctacattcaaatacttt-attttctcaaattatta 193  Q
    |||||| ||||| || |||||||| |||||||||| ||||| |||||||||||||||||    
T  26207999 agtgtccgacactgacacatgtggttacattcaaacacttttattttctcaaattatta 26208057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 16315930 - 16315873
Alignment:
Q  144 acaccgatacatgtggctacattcaaatactttattttctcaaattattatcagtgtc 201  Q
    |||| ||||||||||| ||||||||| ||  | |||| ||||||||||||||||||||    
T  16315930 acacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtc 16315873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 4206366 - 4206334
Alignment:
Q  161 tacattcaaatactttattttctcaaattatta 193  Q
    |||||||||||| ||||||||||||||||||||    
T  4206366 tacattcaaatattttattttctcaaattatta 4206334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 21473 - 21424
Alignment:
Q  144 acaccgatacatgtggctacattcaaatactttattttctcaaattatta 193  Q
    |||| ||||||||||| ||||||||| || |||||||||||||| |||||    
T  21473 acactgatacatgtggttacattcaattattttattttctcaaactatta 21424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 11779395 - 11779440
Alignment:
Q  161 tacattcaaatactttattttctcaaattattatcagtgtcgtgtt 206  Q
    |||||||| ||| |||||||||||||||||||||| ||||| ||||    
T  11779395 tacattcatatattttattttctcaaattattatccgtgtcatgtt 11779440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University