View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6059_low_12 (Length: 282)
Name: NF6059_low_12
Description: NF6059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6059_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 44087391 - 44087646
Alignment:
| Q |
9 |
caagaaaatatatatacaccggataattaattttaattactaggagggataaaatgatcggattattctttacgattatcatattcaaggatcaaagtat |
108 |
Q |
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| T |
44087391 |
caagaaaatataaatacaccggataattaattttaattactaggagggataaaatgatcggattattctttacgattatcatattcaaggatcaaagtat |
44087490 |
T |
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| Q |
109 |
cttcataaaatatgttggtgttttcacttttcatactcacttatctatgatatatttgatataacatttgaccaagcctttacaataaccctccaaagag |
208 |
Q |
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| T |
44087491 |
cttcataaaatatgttggtgttttcacttttcatactcacttatctatgatatatttgatataacatttgaccaagcctttacaataaccctccaaagag |
44087590 |
T |
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| Q |
209 |
gagaagatgttgaactaacaataataaaagacatggtattacaatcacatttatactt |
266 |
Q |
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| T |
44087591 |
gaga--atgttgaactaacaataataaaagacatggtattacaatcacatttatactt |
44087646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 70 - 265
Target Start/End: Original strand, 44103270 - 44103458
Alignment:
| Q |
70 |
attattctttacgattatcatattcaaggatcaaagtatcttcataaaatatgttggtgttttcacttttcatactcacttatctatgatatatttgata |
169 |
Q |
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|||| |||||| ||||| |||||||||||||| ||||||| | | ||| | |||||||||||||| |||| |||||||| | |||||||||||| |
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| T |
44103270 |
attaatctttaagattaacatattcaaggatccaagtatcattacaaactttgttggtgttttca----tcat---cacttatccttaatatatttgata |
44103362 |
T |
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| Q |
170 |
taacatttgaccaagcctttacaataaccctccaaagaggagaagatgttgaactaacaataataaaagacatggtattacaatcacatttatact |
265 |
Q |
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| T |
44103363 |
taacattcgaccattcctttacaataaccttctaaagaggagaagatgttgaactaacactaatagaagaaatgctattacaaccacatttatact |
44103458 |
T |
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