View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6059_low_13 (Length: 276)
Name: NF6059_low_13
Description: NF6059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6059_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 54190520 - 54190767
Alignment:
| Q |
18 |
ggaggccacttgcagaatgagaagaacgcacgggaaaccaaaaagaaaattagaagaaacgaactattcagtgaaatagaaaataaggataacatagtat |
117 |
Q |
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| T |
54190520 |
ggaggccacttggagaaggagaagaacgcacgggaaaccaaaaagaaaattagaagaaacgaactattcagtgaaatagaaaataaggataacatagtat |
54190619 |
T |
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| Q |
118 |
tatatgattaatagattccatttcattgcataagcctcaaaatagaggtaatgaacaattggataaaaggatggtttgaaattgaatgaatttcatttca |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54190620 |
tatatgattaatagattccatttcattgcatacgcctcaaaatagaggtaatgaacaattggataaaaggatggtttgaaattgaatgaatttcatttca |
54190719 |
T |
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| Q |
218 |
cttttttgcaaaaattaaataacagaatttaacttcacaatgcttctt |
265 |
Q |
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| T |
54190720 |
cttttttgcaaaaattaaataacagaatttaacttcacaatgcttctt |
54190767 |
T |
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