View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6059_low_17 (Length: 251)
Name: NF6059_low_17
Description: NF6059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6059_low_17 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 2517033 - 2516867
Alignment:
| Q |
85 |
taccggatctttgttaagatatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaagg |
184 |
Q |
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| T |
2517033 |
taccggatctttgttaagatatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaagg |
2516934 |
T |
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| Q |
185 |
aacatgaatttgaccgtttgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgt |
251 |
Q |
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| T |
2516933 |
aacatgaatttgaccgtttgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgt |
2516867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 251
Target Start/End: Complemental strand, 2512779 - 2512631
Alignment:
| Q |
103 |
atatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaaggaacatgaatttgaccgtt |
202 |
Q |
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| T |
2512779 |
atatgtttatgaagagagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataatttttagagaatgaaaggaacatgaatttaactgtt |
2512680 |
T |
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| Q |
203 |
tgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgt |
251 |
Q |
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| T |
2512679 |
acttactatctcttgcatgtaaatttggaagtgagcatgtttagtatgt |
2512631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 2509517 - 2509378
Alignment:
| Q |
112 |
tgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaaggaacatgaatttgaccgtttgttactat |
211 |
Q |
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| T |
2509517 |
tgaagaaagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataattttcagagaatgaaaggaacattaatttaactgttacttactat |
2509418 |
T |
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| Q |
212 |
ccattgcatgcaaatgttggagtgagcatgtttagtatgt |
251 |
Q |
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| T |
2509417 |
ctcttgcatgtaaatttcgaagtgagcatgtttagtatgt |
2509378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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