View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6059_low_3 (Length: 517)
Name: NF6059_low_3
Description: NF6059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6059_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 203 - 499
Target Start/End: Complemental strand, 2516685 - 2516389
Alignment:
| Q |
203 |
gtcagtaatacgatatttgatggcattgtatcgccaaatacatttgttatctagatcatatgtttggtcgatgcctgatacgaggcagtgttatttttaa |
302 |
Q |
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| T |
2516685 |
gtcagtaatacgatatttgatggcattgtatcgccaaatacatttgttatttagatcatatgtttggtcgatgcctgatacgaggcagtgttatttttaa |
2516586 |
T |
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| Q |
303 |
tcattggattaaaaacaatgatcatatgactagtaatcatatttgctatcctctatgtgttgtctaaaagactctaaagtggtgttagtaaaagaaggag |
402 |
Q |
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| T |
2516585 |
tcattggattaaaaacaatgatcatatgactagtaatcatatttgctatcctctatgtgttgtctaaaagactctaaagtggtgttagtaaaagaaggag |
2516486 |
T |
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| Q |
403 |
caatatgattccctacaaatccatgcatataaccatcataactcacttgcattggttagtggttaggtggtcttaacttggaatcttggagtgtact |
499 |
Q |
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| T |
2516485 |
caatatgattccctacaaatccatgcatataaccatcataactcacttgcattggttagtggttaggtggtcttaacttggaaccttggagtgtact |
2516389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 2516885 - 2516782
Alignment:
| Q |
2 |
gtgagcatgtttagtatgtgtgataccacatggcttaataatttggagtgcacataaatttattatatttggtcttgctactatactaaataccattgct |
101 |
Q |
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| T |
2516885 |
gtgagcatgtttagtatgtgtgataccacatggcttaataatttggagtgcacataaatttattatatttggtcttgctactatactaaataccattgct |
2516786 |
T |
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| Q |
102 |
gtga |
105 |
Q |
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|||| |
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| T |
2516785 |
gtga |
2516782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 2509396 - 2509336
Alignment:
| Q |
2 |
gtgagcatgtttagtatgtgtgataccacatggcttaa---taatttggagtgcacataaa |
59 |
Q |
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| T |
2509396 |
gtgagcatgtttagtatgtgtgatactacatggcttaataataatttggagtgcacctaaa |
2509336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 2512649 - 2512608
Alignment:
| Q |
2 |
gtgagcatgtttagtatgtgtgataccacatggcttaataat |
43 |
Q |
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| T |
2512649 |
gtgagcatgtttagtatgtgtgataccacatggctcaataat |
2512608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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