View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6059_low_5 (Length: 355)

Name: NF6059_low_5
Description: NF6059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6059_low_5
NF6059_low_5
[»] chr1 (3 HSPs)
chr1 (78-215)||(48976550-48976687)
chr1 (207-281)||(48976707-48976781)
chr1 (12-54)||(48976488-48976530)
[»] chr5 (3 HSPs)
chr5 (111-226)||(32119118-32119233)
chr5 (279-336)||(29287040-29287097)
chr5 (15-48)||(32119027-32119060)
[»] chr3 (3 HSPs)
chr3 (157-231)||(2213701-2213775)
chr3 (78-148)||(2213832-2213902)
chr3 (279-336)||(4553766-4553823)
[»] chr2 (1 HSPs)
chr2 (279-336)||(25119995-25120052)
[»] scaffold0150 (1 HSPs)
scaffold0150 (279-336)||(15131-15188)
[»] scaffold0018 (1 HSPs)
scaffold0018 (279-328)||(134295-134344)
[»] chr8 (2 HSPs)
chr8 (279-336)||(6762524-6762581)
chr8 (279-336)||(34215436-34215493)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 48976550 - 48976687
Alignment:
Q  78 tcgatgcaacacaaacctttgaaagcagaatctgagaaaaattgggaaaagatagcgatgaaaatcgaatcgattgaaacgaagagagtttgtgtctgta 177  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||||| |||||||| ||||    
T  48976550 tcgatgaaacacaaacctttgaaagcagaatctgagaaaaactgggaaaagaaagtgaagaaaatcgaatcgattgaaacgaagagtgtttgtgtatgta 48976649  T
Q  178 ttttgtagaacggaaaccctttctttcagctttaaaac 215  Q
    |||||| |||  ||||||||| |||| |||||||||||    
T  48976650 ttttgtggaatcgaaacccttccttttagctttaaaac 48976687  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 48976707 - 48976781
Alignment:
Q  207 ctttaaaacggtgcgtttcagagaggactccagagagaggagatcgaacaaattgatttggtaaaccaatttttt 281  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48976707 cttttaaacggtgcgtttcagagaggactccagagagaggggatcgaacaaattgatttggtaaaccaatttttt 48976781  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 48976488 - 48976530
Alignment:
Q  12 agagaaataaatataaaatcaaaggcttggatttcagctactg 54  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  48976488 agagaaataaatataaaatcaaaggcttgaatttcaactactg 48976530  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 32119118 - 32119233
Alignment:
Q  111 gagaaaaattgggaaaagatagcgatgaaaatcgaatcgattgaaacgaagagagtttgtgtctgtattttgtagaacggaaaccctttctttcagcttt 210  Q
    |||||||| || ||||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||| || ||||  ||||| |||||||| |||||    
T  32119118 gagaaaaactgagaaaagagagcgaagaaaatcgaatcgtttgaaacgaagagtgtttgtgtctgtatttagtggaaccaaaaccttttctttctgcttt 32119217  T
Q  211 aaaacggtgcgtttca 226  Q
    | ||||||||||||||    
T  32119218 ataacggtgcgtttca 32119233  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 29287040 - 29287097
Alignment:
Q  279 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaatttt 336  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  29287040 tttatagcgctttcatgttaaaagcgctatttaaggggcgttatattttctcaatttt 29287097  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 32119027 - 32119060
Alignment:
Q  15 gaaataaatataaaatcaaaggcttggatttcag 48  Q
    ||||||||||||||||||||||||||||||||||    
T  32119027 gaaataaatataaaatcaaaggcttggatttcag 32119060  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 2213775 - 2213701
Alignment:
Q  157 cgaagagagtttgtgtctgtattttgtagaacggaaaccctttctttcagctttaaaacggtgcgtttcagagag 231  Q
    ||||||| |||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  2213775 cgaagagtgtttgtgtttgtattgtgtggaaccgaaaccctttctttcagctttaaaacggtgcgtttcaaagag 2213701  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 2213902 - 2213832
Alignment:
Q  78 tcgatgcaacacaaacctttgaaagcagaatctgagaaaaattgggaaaagatagcgatgaaaatcgaatc 148  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||| ||||  ||||||||||||    
T  2213902 tcgatgcaacacaaacctttgaaagcaaaatctgagaaaaactgagaaaagaaagcggagaaaatcgaatc 2213832  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 4553823 - 4553766
Alignment:
Q  279 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaatttt 336  Q
    ||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  4553823 tttatagcgctttcatgtcaaaaacgttatttaaggggcgctgtattttctcaatttt 4553766  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 25120052 - 25119995
Alignment:
Q  279 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaatttt 336  Q
    ||||||| |||||||||| ||||||| |||||| ||||| ||||||||||||||||||    
T  25120052 tttatagcgctttcatgttaaaagcgttatttatggggcactatattttctcaatttt 25119995  T

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Target: scaffold0150 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 15188 - 15131
Alignment:
Q  279 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaatttt 336  Q
    ||||||| ||||| |||| |||||||||||| | || ||||||||||||| |||||||    
T  15188 tttatagcgcttttatgttaaaagcgctattaatggagcgctatattttcccaatttt 15131  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 134295 - 134344
Alignment:
Q  279 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttc 328  Q
    ||||||| |||||||||| |||||||||||| | || |||||||||||||    
T  134295 tttatagcgctttcatgttaaaagcgctattaatggagcgctatattttc 134344  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 6762581 - 6762524
Alignment:
Q  279 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaatttt 336  Q
    ||||||| |||||  ||| |||||||||||||| | |||||||||||||| |||||||    
T  6762581 tttatagcgctttagtgttaaaagcgctatttatgaggcgctatattttcccaatttt 6762524  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 34215436 - 34215493
Alignment:
Q  279 tttatagagctttcatgtcaaaagcgctatttaaggggcgctatattttctcaatttt 336  Q
    ||||||| |||||  ||| |||||||||||||| | |||||||||||||| |||||||    
T  34215436 tttatagcgctttagtgttaaaagcgctatttatgaggcgctatattttcccaatttt 34215493  T

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