View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6059_low_6 (Length: 353)
Name: NF6059_low_6
Description: NF6059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6059_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 66 - 338
Target Start/End: Complemental strand, 1047720 - 1047441
Alignment:
| Q |
66 |
caaattcaattgaaggcttccttccaacacagcttgagattgtgagtggccgtggatatgatgattgttgtgttgtgt-----gatcgtgagtcatt--a |
158 |
Q |
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| T |
1047720 |
caaattcaattgaaggcttccttccaacacagcttgagattgtgagtggccgtggatatgatgattgttgtgttgtgttgtgtgatcgttagtcatttta |
1047621 |
T |
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| Q |
159 |
ccttatctaccaattagatttcgctagactaatgagggatcctgtgattctatcatcagggcacacttatgatagaatttcaattccagagtggatagac |
258 |
Q |
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| T |
1047620 |
ccttatctaccaattagatttcgctagactaatgagggatcctgtgattctatcatcagggcacacttatgatagaatttcaattccagagtgtatagac |
1047521 |
T |
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| Q |
259 |
tctggtcaacacacttgtcttgaaagtgaacaaagactaatccacaatgctttaataccaaattatgtattaaagagcct |
338 |
Q |
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| T |
1047520 |
tctggtcaacacacttgtcttgaaagtgaacaaagactaatccacaatgctttaataccaaattatgtattaaagagcct |
1047441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 304
Target Start/End: Original strand, 1023006 - 1023189
Alignment:
| Q |
118 |
tggatatgatgattgttgtgttgtgtgatcgtgagtcattaccttatctaccaattagatttcgctagacta---atgagggatcctgtgattctatcat |
214 |
Q |
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| T |
1023006 |
tggatatgatgattgttgtgt-gtgtgatcatgagtaattaccttat-taccacttgggttgcactagactttatatgggggaaccc-tgattgtatcat |
1023102 |
T |
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| Q |
215 |
cagggcacacttatgatagaatttcaattccagagtggatagactctggtcaacacacttgtcttgaaagtgaacaaagactaatccaca |
304 |
Q |
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| T |
1023103 |
cagggcacacttat---agaatttcaattgcagagtgtatagactctggtgaccacacttgtcctgaaagtaaacaaagactaattcaca |
1023189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 1047825 - 1047764
Alignment:
| Q |
8 |
attattctaatttctaactaacctagttaatattcagtaactctgtctttccaccctacaaa |
69 |
Q |
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| T |
1047825 |
attattctaatttctaactaacctagttaatattcagtaactctgtctttccaccctacaaa |
1047764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 1020735 - 1020843
Alignment:
| Q |
161 |
ttatctaccaattagatttcgctagactaatgagggatcctg-------tgattctatcatcagggcacacttatgatagaatttcaattccagagtgga |
253 |
Q |
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| T |
1020735 |
ttatctaccacttgaattttgctagactaatgagggatcttgattcctatgattgtataatcaagacacacttatgatagaatttcaactgcagagtgga |
1020834 |
T |
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| Q |
254 |
tagactctg |
262 |
Q |
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| T |
1020835 |
cagactctg |
1020843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 1022789 - 1022848
Alignment:
| Q |
10 |
tattctaatttctaactaacctagttaatattcagtaactctgtctttccaccctacaaa |
69 |
Q |
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| T |
1022789 |
tattctaatttctaactaacctagttgatataccgcaactctgccattccaccctgcaaa |
1022848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 175 - 338
Target Start/End: Original strand, 35820675 - 35820839
Alignment:
| Q |
175 |
gatttcgctagac-taatgagggatcctgtgattctatcatcagggcacacttatgatagaatttcaattccagagtggatagactctggtcaacacact |
273 |
Q |
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| T |
35820675 |
gatttcgctagacctaatgagagatcctgtgattgtttcatcaggacacacttatgatagaatttcaattgcagaatggattaactctggtcaccacact |
35820774 |
T |
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| Q |
274 |
tgtcttgaaagtgaacaaagactaatccacaatgctttaataccaaattatgtattaaagagcct |
338 |
Q |
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|||| | |||||| |||||||||||| |||| |||| |||||||||| |||| || |||||||| |
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| T |
35820775 |
tgtcctaaaagtggacaaagactaattcacactgctctaataccaaactatgcgttgaagagcct |
35820839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 40636541 - 40636411
Alignment:
| Q |
75 |
ttgaaggcttccttccaacacagcttgagattgtgagtggccgtggatatgatgattgttgtgttgtgtgatcgtgagtcattaccttatctaccaatta |
174 |
Q |
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| T |
40636541 |
ttgaaggttttcttccaacacagcttgagattgcgagtagccgtggatatgatgattgttgtg-tgtgtgattgtgagtaattaccttatctaccacttg |
40636443 |
T |
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| Q |
175 |
gatttcgctagac-taatgagggatcctgtga |
205 |
Q |
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| T |
40636442 |
gattgcgctaaactttacgagggatcctgtga |
40636411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 40642784 - 40642714
Alignment:
| Q |
268 |
cacacttgtcttgaaagtgaacaaagactaatccacaatgctttaataccaaattatgtattaaagagcct |
338 |
Q |
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| T |
40642784 |
cacacttgtcctgaaagtgaacaaagactaattcacaatgctttcatactaaattatatattaaagagcct |
40642714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 40636658 - 40636608
Alignment:
| Q |
8 |
attattctaatttctaactaacctagttaatattcagtaactctgtctttc |
58 |
Q |
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| T |
40636658 |
attattctaatttctaactaaactagttaatcttccgcaactctgcctttc |
40636608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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