View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6060_low_1 (Length: 617)

Name: NF6060_low_1
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6060_low_1
NF6060_low_1
[»] chr1 (5 HSPs)
chr1 (128-564)||(10005694-10006131)
chr1 (5-56)||(10006212-10006263)
chr1 (128-223)||(50973323-50973417)
chr1 (4-56)||(9995324-9995376)
chr1 (162-223)||(33069514-33069574)
[»] chr6 (2 HSPs)
chr6 (281-597)||(30853368-30853689)
chr6 (128-260)||(20090167-20090300)
[»] chr4 (2 HSPs)
chr4 (128-265)||(4439604-4439741)
chr4 (128-265)||(36086612-36086746)
[»] chr7 (2 HSPs)
chr7 (131-223)||(47902525-47902617)
chr7 (128-223)||(26131166-26131261)
[»] scaffold0264 (1 HSPs)
scaffold0264 (128-223)||(18582-18677)
[»] scaffold0655 (1 HSPs)
scaffold0655 (128-209)||(3319-3399)
[»] chr2 (2 HSPs)
chr2 (130-199)||(34813984-34814052)
chr2 (128-200)||(43674614-43674686)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 128 - 564
Target Start/End: Complemental strand, 10006131 - 10005694
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaatannnn 227  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||        
T  10006131 agatattgaatatggaccctataattttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttactgtctattgtaattaatatttt 10006032  T
Q  228 nnn-gttcatattcattgttaaaatatactgattcttttnnnnnnnntatgtgggaaataagggaaatgtgttcggttaaaccaatacctaaggaagttg 326  Q
        |||||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10006031 ttttgttcatattcattgttaaaatatactgattcttttaaaaataatatgggggaaataagggaaatgtgttcggttaaaccaatacctaaggaagttg 10005932  T
Q  327 tagttggaggcatggtttctgtccacaagagtgttagtgctaatctgaaggaagaaattacccgacttcattcacaaggtagcaccattacgaatcttga 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10005931 tagttggaggcatggtttctgtccacaagagtgttagtgctaatctgaaggaagaaattacccgacttcattcacaaggtagcaccattacgaatcttga 10005832  T
Q  427 gcagcagcttgagaatgtgcaaaggtctatagacaagttggtctcttctgaacaattttcaaactctaaccagtgaagcgtcccccaataataaaaagga 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10005831 gcagcagcttgagaatgtgcaaaggtctatagacaagttggtctcttctgaacaattttcaaactctaaccagtgaagcgtcccccaataataaaaagga 10005732  T
Q  527 acataaaaggaaaaatttgcttcctttgtgttcaagta 564  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10005731 acataaaaggaaaaatttgcttcctttgtgttcaagta 10005694  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 10006263 - 10006212
Alignment:
Q  5 tgtcgaagaatatttcgatgtttccttaggtaattccgcaggattgctgcgg 56  Q
    ||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  10006263 tgtcgaataatatttcgacgtttccttaggtaattccgcaggaatgctgcgg 10006212  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 50973417 - 50973323
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaata 223  Q
    ||||||||||||||  || ||||| ||| |||| |||| ||||| ||||||||| ||||||||||| |||| | ||| ||||||||||||||||||    
T  50973417 agatattgaatatggtcc-tataattttagatttaagtccaaattaacacatatccaaataaaatgacaaattattactgtcgattgtaattaata 50973323  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 9995376 - 9995324
Alignment:
Q  4 atgtcgaagaatatttcgatgtttccttaggtaattccgcaggattgctgcgg 56  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||| ||||    
T  9995376 atgtcgaataatattttgacgtttccttaggtaattccgcaggattgcagcgg 9995324  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 33069514 - 33069574
Alignment:
Q  162 aagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaata 223  Q
    |||| ||||| |||| |||| ||||||||||| ||| |||||| ||||||||||||||||||    
T  33069514 aagtccaaattaacatatatccaaataaaatggcaa-ctgttactgtcgattgtaattaata 33069574  T

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Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 281 - 597
Target Start/End: Complemental strand, 30853689 - 30853368
Alignment:
Q  281 gaaataagggaaatgtgttcggttaaaccaatacctaaggaagttgtagttggaggcatggtttctgtccacaagagtgttagtgctaatctgaaggaag 380  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30853689 gaaataagggaaatgcgttcggttaaaccaatacctaaggaggttgtagttggaggcatggtttctgtccacaaaagtgttagtgctaatctgaaggaag 30853590  T
Q  381 aaattacccgacttcattcacaaggtagcaccattacgaatcttgagcagcagcttgagaatgtgcaaaggtctatagacaagttg-----gtctcttct 475  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||     
T  30853589 aaattacccgacttcattcacaaggaagcaccattgcgaatcttgagcagcagcttgagaatgtgcaaaggtctatagacaagttggtgatgtctcttcc 30853490  T
Q  476 gaacaattttcaaactctaaccagtgaagcgtcccccaataataaaaaggaacataaaaggaaaaatttgcttcctttgtgttcaagtaactctactaat 575  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||| ||||| |||||||||| |||||||| |||    
T  30853489 gaacaattttcaaactctaaccagtgaagcatcccccaagaataaaaaggaacataagaggaaaaaattgattcctctgtgttcaagcaactctacaaat 30853390  T
Q  576 tgccccaattttatcagatctc 597  Q
     ||||||| |||||||||||||    
T  30853389 cgccccaactttatcagatctc 30853368  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 128 - 260
Target Start/End: Original strand, 20090167 - 20090300
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaata-nnn 226  Q
    |||||||||||||| ||||||||| |||  ||| |||| || |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||        
T  20090167 agatattgaatatggaccctataattttaaatttaagtccagatcaactcatattcaaataaaatgtcaaaatgttagtgtcgattgtaattaatatctt 20090266  T
Q  227 nnnngttcatattcattgttaaaatatactgatt 260  Q
        |||||||||||||||||||||||| |||||    
T  20090267 ttttgttcatattcattgttaaaatatattgatt 20090300  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 4439741 - 4439604
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaatannnn 227  Q
    ||||||| |||||| || |||||| ||| |||| |||| ||||||||| ||| | |||| ||||||||||| ||||| ||||||||||||||||||        
T  4439741 agatattaaatatggacgctataattttagatttaagtccaaatcaactcatttccaaaaaaaatgtcaaattgttactgtcgattgtaattaatagttt 4439642  T
Q  228 nnngttcatattcattgttaaaatatactgattctttt 265  Q
       ||| || |||| |||||||||||  ||||||||||    
T  4439641 tttgtttatgttcaatgttaaaatattttgattctttt 4439604  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 36086746 - 36086612
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaatannnn 227  Q
    |||||||||||||| | ||||||| ||| |||| ||||  ||||||||||||||  | ||||| ||||||||||| |    |||||||||||||||        
T  36086746 agatattgaatatggatcctataattttagatttaagtctaaatcaacacatatctatataaattgtcaaactgtca---ccgattgtaattaataattt 36086650  T
Q  228 nnngttcatattcattgttaaaatatactgattctttt 265  Q
       ||||| ||||| |||||||||||  ||||||||||    
T  36086649 tttgttcacattcaatgttaaaatattttgattctttt 36086612  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 47902617 - 47902525
Alignment:
Q  131 tattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaata 223  Q
    ||||||||||| ||||||||| ||   ||| || | |||||||||| |||| ||||||||||||||||| ||||   ||||||||||||||||    
T  47902617 tattgaatatggaccctataatttaaaatttaaatccaaatcaacatatatccaaataaaatgtcaaacagttaccttcgattgtaattaata 47902525  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 26131261 - 26131166
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaata 223  Q
    |||||||||||||| | || |||| |||  ||| ||||  ||||||||||||||  ||||||||||||||| | ||| |||||||||| |||||||    
T  26131261 agatattgaatatggatccaataattttaaatttaagtttaaatcaacacatatctaaataaaatgtcaaattattattgtcgattgtgattaata 26131166  T

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Target: scaffold0264 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 18582 - 18677
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtcgattgtaattaata 223  Q
    |||||||||||||| ||||||||| |||  ||| |||  || |||||| |||||  ||| |||||||||||  ||||||||| |||||||||||||    
T  18582 agatattgaatatggaccctataattttaaatttaaggccagatcaactcatatttaaagaaaatgtcaaaaagttagtgtcaattgtaattaata 18677  T

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Target: scaffold0655 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 3399 - 3319
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaactgttagtgtc 209  Q
    |||||||||||||| ||||||||| ||| |||| || | |||||||||||| || | || ||||||||||| ||||| ||||    
T  3399 agatattgaatatggaccctataattttagatttaaatccaaatcaacaca-attccaagaaaatgtcaaattgttactgtc 3319  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 34813984 - 34814052
Alignment:
Q  130 atattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaac 199  Q
    ||||||||||||| |||||||  ||| ||||  ||| ||||||||||||||| |||||||||||| ||||    
T  34813984 atattgaatatga-ccctatagttttagatttcagttcaaatcaacacatattcaaataaaatgtgaaac 34814052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 43674614 - 43674686
Alignment:
Q  128 agatattgaatatgaaccctataagtttggattaaagtacaaatcaacacatatgcaaataaaatgtcaaact 200  Q
    |||||||||| ||  ||||||||| |||  ||| |||| |||||||| | |||| ||||||||||||||||||    
T  43674614 agatattgaagatagaccctataattttaaatttaagtccaaatcaatatatatccaaataaaatgtcaaact 43674686  T

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