View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6060_low_10 (Length: 299)
Name: NF6060_low_10
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6060_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 3342862 - 3343025
Alignment:
| Q |
16 |
atttaaacttttcatcaaacatcttttggaaaatagaaatgcacaattgtttcataaaa------aagatgatttatcatgcaagattctcgttattggc |
109 |
Q |
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| T |
3342862 |
atttaaacttttcatcaaacaacatttggaaaatagaaatgcacaattgtttcataaaaaaaaaaaagatgatttatcatgcaagattctcgttattggc |
3342961 |
T |
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| Q |
110 |
atcgttagtctattaattttatgcaaatagataacgacaagaactatgggattgttcaataggt |
173 |
Q |
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| T |
3342962 |
atcgttagtctattaattttatgcaaatagataacgacaagaactatgggattgttcaataggt |
3343025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 3343065 - 3343099
Alignment:
| Q |
213 |
tttgcaattgttgttgggatacaacaacagttagc |
247 |
Q |
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| T |
3343065 |
tttgcaattgttgttgggatacaacaacagttagc |
3343099 |
T |
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