View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6060_low_11 (Length: 283)
Name: NF6060_low_11
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6060_low_11 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold1640 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 31 - 283
Target Start/End: Original strand, 31979917 - 31980175
Alignment:
| Q |
31 |
atgatgaaagaaaccaccttgttcatgttgttcagaaacatatgactgtggtggtggtgaaaaaggaacaacgttgttggtg------gtggtgttgagg |
124 |
Q |
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| T |
31979917 |
atgatgaaagaaaccaccttgttcatgttgttcagaaacatatgactgtggtggtggtgaaaaaggaacaacgttgttgttgttgttggtggtgttgagg |
31980016 |
T |
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| Q |
125 |
ttgatggtttttgatctagcagcagctctttcttgtttgtgagcattttggtgaccatcaagagcttgagaagtgtagaattttcggtgacaatattgac |
224 |
Q |
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| T |
31980017 |
ttgatggtttttgatctagcagcagctctttcttgtttgtgagcattttggtgaccaccaagagcttgagaagtgtagaattttcggtgacaatattgac |
31980116 |
T |
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| Q |
225 |
actgaaaaattcttgaaggttgttgtggctgtgatgatctgctggttgttcttggtggt |
283 |
Q |
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| T |
31980117 |
actgaaaaattcttgaaggttgttgtggctgtgatgatcttctggttgttcttggtggt |
31980175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 25769311 - 25769354
Alignment:
| Q |
164 |
tgagcattttggtgaccatcaagagcttgagaagtgtagaattt |
207 |
Q |
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| T |
25769311 |
tgagcattttggtgacctccaagagcttgagaagtggagaattt |
25769354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 25774892 - 25774935
Alignment:
| Q |
164 |
tgagcattttggtgaccatcaagagcttgagaagtgtagaattt |
207 |
Q |
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| T |
25774892 |
tgagcattttggtgacctccaagagcttgagaagtggagaattt |
25774935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1640 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1640
Description:
Target: scaffold1640; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 585 - 542
Alignment:
| Q |
164 |
tgagcattttggtgaccatcaagagcttgagaagtgtagaattt |
207 |
Q |
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| T |
585 |
tgagcattttggtgacctccaagagcttgagaagtggagaattt |
542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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