View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6060_low_13 (Length: 232)
Name: NF6060_low_13
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6060_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 45060669 - 45060466
Alignment:
| Q |
10 |
ggaggagcagagaaagagggctgaagctgataagaatgataagtctgtgaaggaccttgtgttgctactctttgagacagcactcttaacttctggattt |
109 |
Q |
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| T |
45060669 |
ggaggagctgagaaagagggctgaagctgataagaatgataagtctgtgaaggaccttgtgttgcttctctttgagacagcactcttaacttctggattt |
45060570 |
T |
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| Q |
110 |
agcctggatgatccaaacatgtttgctggtagaattcacagaatgttgaagctgggtctcagcattgatgaggaagagactggtggagatgaagacatgc |
209 |
Q |
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| T |
45060569 |
agcctggatgatccaaacatgtttgctggtagaattcacagaatgttgaagctgggtctcagcattgatgaggaagagactggtggagatgaagacatgc |
45060470 |
T |
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| Q |
210 |
ctcc |
213 |
Q |
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|||| |
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| T |
45060469 |
ctcc |
45060466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 18622199 - 18622381
Alignment:
| Q |
10 |
ggaggagcagagaaagagggctgaagctgataagaatgataagtctgtgaaggaccttgtgttgctactctttgagacagcactcttaacttctggattt |
109 |
Q |
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|||||| | ||| |||||| | ||||||||||||||||| || || ||||||||||||||| | || || ||||| || || || || |||||||| ||| |
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| T |
18622199 |
ggaggaactgaggaagaggtccgaagctgataagaatgacaaatcagtgaaggaccttgtgcttctgctttttgaaaccgctcttttgacttctggtttt |
18622298 |
T |
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| Q |
110 |
agcctggatgatccaaacatgtttgctggtagaattcacagaatgttgaagctgggtctcagcattgatgaggaagagactgg |
192 |
Q |
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| T |
18622299 |
agccttgatgagccaaacacctttgctggaaggattcataggatgttgaaattgggtcttagcatagatgaggacgaaactgg |
18622381 |
T |
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