View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6060_low_3 (Length: 500)
Name: NF6060_low_3
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6060_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 75 - 492
Target Start/End: Original strand, 14192871 - 14193294
Alignment:
| Q |
75 |
ggttgctcaatatgtggaggtctggaacgatcatcgggttgctagaattgtgcagagggcattcggttaccctttacaaaataccaggggctgtgctcat |
174 |
Q |
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| T |
14192871 |
ggttgctcaacatgtgcaggtttggaacgatcatcgggttgctagaattgtgcagagggcattcggttaccctcttcagaataccaggggctgtgctcat |
14192970 |
T |
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| Q |
175 |
atacttgattttatgcacttttctactgtgacagacagccggattagagatgcaaagccagcaaggcaagagctggttcgatgcgctactaagcttctag |
274 |
Q |
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| T |
14192971 |
atacttgatttaatgcacttttctactgtggaagacagccggattagagatgcaaagccagcaaggcaagagctagttcgatgcgctactagtcttctag |
14193070 |
T |
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| Q |
275 |
ctgctgggataatcatcattccagtac---gccaggtgcnnnnnnntccggaggtaattgatttgacggatacattcgactttaatataagttttgacga |
371 |
Q |
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| T |
14193071 |
ctgctgggataatcatcattccagtaccctgcctggtggaacgaaatccccaggtacttgatttgacggatacattcgactttaatatacgtttggacta |
14193170 |
T |
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| Q |
372 |
t---acagggaagctaggaatcccggtgttgaatgtcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacatt |
468 |
Q |
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| T |
14193171 |
tataacgggggagctacgaatcccggtgttgaatttcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacatt |
14193270 |
T |
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| Q |
469 |
aaatgcaaatatacatcctatgct |
492 |
Q |
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| T |
14193271 |
agatgcaaatatacatcctatgct |
14193294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 18521891 - 18521949
Alignment:
| Q |
396 |
gttgaatgtcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcaga |
454 |
Q |
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| T |
18521891 |
gttgtatgttaaggaaacaacggaagtgaagtggaggaatttgattgcttgggaacaga |
18521949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 409 - 491
Target Start/End: Original strand, 4591407 - 4591489
Alignment:
| Q |
409 |
gaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgc |
491 |
Q |
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| T |
4591407 |
gaaacaacggaagtgaagtggaggaatttgattgcttgggagcaaagcaaaaattggattagatgcaaatacacatcctatgc |
4591489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 4555103 - 4555188
Alignment:
| Q |
406 |
aaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgc |
491 |
Q |
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| T |
4555103 |
aaggaaagaacggaagtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggagtaaatgcaaatacacttcctatgc |
4555188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 4620934 - 4620992
Alignment:
| Q |
404 |
tcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaatt |
462 |
Q |
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| T |
4620934 |
tcaaggaaacaactgaagttaagtggaggaatttgattgcttgggagcaaagcaaaatt |
4620992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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