View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6060_low_4 (Length: 461)
Name: NF6060_low_4
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6060_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 3482219 - 3482604
Alignment:
| Q |
1 |
ttcagctgccaccaaatgctaaattctgctgtattctcgtcaaggattgaaatatttgtcaacaaaataattattattaatgaaatgaaataagtatcat |
100 |
Q |
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| T |
3482219 |
ttcagctgccaccaaatgctaaattctgctgtattctcgtcaaggattgaaatctttgtcaacaaaataattattattaatgaaatgaaataagtatcat |
3482318 |
T |
|
| Q |
101 |
ttaaccaaaaataaaatgtagcctgtgtagtttgatctaattggtaaggaatcgattcatattttacaagaacttgcctagacgtgtgctacgatattta |
200 |
Q |
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| T |
3482319 |
ttaaccaaaaataaaatgtagccggtgtagtttgatctaattgataaggaatcgactcatattttacaagaactt--------gtgtgctacaatattta |
3482410 |
T |
|
| Q |
201 |
tagtttataattcacgtgggtaaatgagtgcctttgtgatattgtttaaagaactaaaagaagtaagtttgcat-nnnnnnngtgtactttgacaataat |
299 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
3482411 |
tagtttataattcatgtgggtaaatgagtgcctttgtgatattgtttaaagaattaaaagaagtaagtttgcataaaagaatgtgtactttgacaataat |
3482510 |
T |
|
| Q |
300 |
aacattttatatttctaagacatttttcattgtagaactcattagcaaaatctttaaataaaactgtacagcacaaattatatgtttactttggacgcct |
399 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3482511 |
aacattttatattt-----acatttttcattgtagaactcattagcaaaatctttaaataaaactgtacagcacaaat--tatgtttactttggacgcct |
3482603 |
T |
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