View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6060_low_5 (Length: 402)
Name: NF6060_low_5
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6060_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 225 - 384
Target Start/End: Original strand, 53118593 - 53118752
Alignment:
| Q |
225 |
tcttatactcttattattcaacaaatgataataatttacactaactcttttctttgtgtgtacaatcagatcaaatgagtgtggtcacgtattcacatta |
324 |
Q |
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| T |
53118593 |
tcttatactcttattattcaacaaatgataataatttacactaactcttttctttgtgtgtacaatcagatcaaatgagtgtggtcacgtattcacatta |
53118692 |
T |
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| Q |
325 |
tgaatgtagacaacgggatcaggatccaatagctcgtattttcctttccttcgcagaaca |
384 |
Q |
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| T |
53118693 |
tgaatgtagacaacgggatcatgatccaatagctcgtattttcctttccttcgcagaaca |
53118752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 53118378 - 53118499
Alignment:
| Q |
14 |
ttattcttaagtttgtatagtgtaaaatagaaattgacgtactgattgatagaaaattatatatttataaaatggcataaacatgctattaaatacgtca |
113 |
Q |
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| T |
53118378 |
ttattcttaagtttgtatagtgtaaaatagaaattgacgtactgattgatagaaaattatatatttataaaatggcataaacatgctattaaatacgtca |
53118477 |
T |
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| Q |
114 |
att-aatatattataccgaaac |
134 |
Q |
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| T |
53118478 |
attaaatatattataccgaaac |
53118499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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