View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6060_low_6 (Length: 367)
Name: NF6060_low_6
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6060_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 40444602 - 40444957
Alignment:
| Q |
1 |
caatcataagccttagcagcatcaatctctctgtcaaatgttcctaaccaaaccctgcttcctttccttgtcggatcacgaatttctgcagcatattttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40444602 |
caatcataagccttagcagcatcaatctctctgtcaaatgttcctaaccaaaccctgcttcctttccttgtcggatcacgaatttctgcagcatattttc |
40444701 |
T |
|
| Q |
101 |
cccatggccttctccttactcctctgtaatgccctgttccataacttctttgttccttcctctccaacaccattgattctgccaaattggacgtcttttg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
40444702 |
cccatggccttctccttactcctctgtaatgccttgttccataacttctttgttccttcctctctaacaccattgattctgccaaattggtcgtcttttg |
40444801 |
T |
|
| Q |
201 |
agtttcctctaagggactttcttcatgcaagttttgtaccttattatgagaagaagtgaagtcaatcaattttgtatcagcttcaaaaccaaggatttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40444802 |
agtttcctctaagggactttcttcatgcaagttttgtaccttattatgagaagaagtgaagtcaatcaattttgtatcagcttcaaaaccaaggatttca |
40444901 |
T |
|
| Q |
301 |
agaaaactgttttgttctgaaaagtatgaatccaaatcaatttctggtgatgatgt |
356 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40444902 |
agaaaactgttatgttctgaaaagtatgaatccaaatcaatttctggtgatgatgt |
40444957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 18653020 - 18652897
Alignment:
| Q |
2 |
aatcataagccttagcagcatcaatctctctgtcaaatgttcctaaccaaaccctgcttcctttccttgtcggatcacgaatttctgcagcatattttcc |
101 |
Q |
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|||||||||| || ||||||||||| || | ||||||||| |||||||||||||| ||||||||||||| ||||| | || || || ||| |||| || |
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| T |
18653020 |
aatcataagcttttgcagcatcaatttcacagtcaaatgtacctaaccaaaccctacttcctttccttgatggatcccttatctcagctgcaaatttccc |
18652921 |
T |
|
| Q |
102 |
ccatggccttctccttactcctct |
125 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
18652920 |
ccatggccttctccttacacctct |
18652897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 30641782 - 30641730
Alignment:
| Q |
61 |
cctttccttgtcggatcacgaatttctgcagcatattttccccatggccttct |
113 |
Q |
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||||||||||| || |||||||||||||| ||| ||||||||||||| ||||| |
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| T |
30641782 |
cctttccttgttgggtcacgaatttctgctgcaaattttccccatggtcttct |
30641730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 30710538 - 30710608
Alignment:
| Q |
34 |
tcaaatgttcctaaccaaaccctgcttcctttccttgtcggatcacgaatttctgcagcatattttcccca |
104 |
Q |
| |
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||||||||||||| ||||||||| |||||| ||||| | ||| | ||||||||||||||||||||||| |
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| T |
30710538 |
tcaaatgttcctagccaaacccttcttcctcctcttgttgtatctctgatttctgcagcatattttcccca |
30710608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 4420232 - 4420282
Alignment:
| Q |
81 |
aatttctgcagcatattttccccatggccttctccttactcctctgtaatg |
131 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4420232 |
aatttcagctgcatattttccccatggccttctccttactcctctataatg |
4420282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 38809697 - 38809651
Alignment:
| Q |
79 |
cgaatttctgcagcatattttccccatggccttctccttactcctct |
125 |
Q |
| |
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||||| ||||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
38809697 |
cgaatctctgctgcacattttccccatggccttatccttactcctct |
38809651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 38822646 - 38822600
Alignment:
| Q |
79 |
cgaatttctgcagcatattttccccatggccttctccttactcctct |
125 |
Q |
| |
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||||| ||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
38822646 |
cgaatctctgcagcaaattttccccatggccttatcctcactcctct |
38822600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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