View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6060_low_8 (Length: 332)
Name: NF6060_low_8
Description: NF6060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6060_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 27 - 322
Target Start/End: Original strand, 34814328 - 34814621
Alignment:
| Q |
27 |
cttatggctaatgacttataactgataaattatagatatgattaacgactgatagctttggttggtataagcacaagataaatgagtccaacactaaagt |
126 |
Q |
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| T |
34814328 |
cttatggcgaatgacttataactgataaattatagatatgattaacgactgatagctttggttggtataagcacaagataaatgagtccaacactaaagt |
34814427 |
T |
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| Q |
127 |
acattgctgaagttagtccttagtttgtcaattgaaggatcccacatatagtacaagatagaacatgtctccttattgatcatagaaaaatagatatcta |
226 |
Q |
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| T |
34814428 |
acattgctgaagttagtccttagtttgtcaattgaaggatcccacatatagtacaagatagaacatgtctccttattgat--aaaaaaaatagatatcta |
34814525 |
T |
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| Q |
227 |
agaggcaagcaaaggttgtaattgtaccaagtttcagtttcggagtttgcattagtttagcaatcctttcaagtgtacttgcaattttggattcat |
322 |
Q |
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| T |
34814526 |
agaggcaaacaaaggttgtaattgtaccaagtttcagtttcggagtttgcagtagttcagcaatcctttcaagtgtacttgcaattttggattcat |
34814621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 325
Target Start/End: Original strand, 34815381 - 34815606
Alignment:
| Q |
97 |
gcacaagataaatgagtccaacactaaagtacattgctgaagttagtccttagtttgtcaattgaaggatcc--cacatatagtacaagatagaacatgt |
194 |
Q |
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| T |
34815381 |
gcacaagataaatgagttcaaaactaaaacacattgctgaagttagtccttagtttgtcaattgaagaatcccacacatatctcaaaagatagaatatgt |
34815480 |
T |
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| Q |
195 |
ctccttattgatcatagaaaaatagatatctaagaggcaagcaaaggttgtaattgtaccaagtttcagtttcggagtttgcattagtttagcaatcctt |
294 |
Q |
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| T |
34815481 |
ctccttatag---gtag-aaaatagatatctaagagtcaaatagaggatgaaattgtaccaagtttcactttaggagtttg-attaatttagcaatcctt |
34815575 |
T |
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| Q |
295 |
tcaagtgtacttgcaattttggattcatctc |
325 |
Q |
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| T |
34815576 |
tcaaatgtaccaacagttttggattcatctc |
34815606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 34814294 - 34814330
Alignment:
| Q |
48 |
ctgataaattatagatatgattaacgactgatagctt |
84 |
Q |
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| T |
34814294 |
ctgataaattatagatatgattgacgactgatagctt |
34814330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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