View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_high_11 (Length: 448)
Name: NF6063_high_11
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 38224116 - 38223679
Alignment:
| Q |
1 |
ctctctacccattgagcttagggatcaatttggcatgtcgcaagaacatacaaagtacaaaacataaataatttatttcagagcatataattttcatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38224116 |
ctctctacccattgagcttagggatcaatttggcatgtcgcaagaacatacaaggtacaaaacataaataatttatttcagagcatataattttcatgtg |
38224017 |
T |
|
| Q |
101 |
ttcagattattttatatgcttatgtaatagaagtactatagtttattgtacccnnnnnnnnnnggtactagtatagttttctcaatcttgttttgtttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
38224016 |
ttcagattattttatatgcttatgtaatagaagtactatagtttattgtacccaaaaaaaaa----attactatagttttctcaatcttgttttgtttac |
38223921 |
T |
|
| Q |
201 |
agagtatatgctggaacacttacatattgaagaaagtaaagtaccaaaaatgtgcctagatttgtatctggaacacgggacaactatggcaggaatgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223920 |
agagtatatgctggaacacttacatattgaagaaagtaaagtaccaaaaatgtgcctagatttgtatctggaacacgggacaactatggcaggaatgaag |
38223821 |
T |
|
| Q |
301 |
gtatacagatttggcattaacctcagttttctcttctcttaatttcttctgaaatactaattcaatataaatgatcagtgatataatttaatagtttttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223820 |
gtatacagatttggcattaacctcagttttctcttctcttaatttcttctgaaatactaattcaatataaatgatcagtgatataatttaatagtttttc |
38223721 |
T |
|
| Q |
401 |
taagttttagtcttaatttccgactatcaggccctttgctac |
442 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
38223720 |
taagttttagtcttaatttcctactatcaggcccttggctac |
38223679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University