View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_13 (Length: 438)
Name: NF6063_high_13
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 40460223 - 40460519
Alignment:
| Q |
19 |
gatttatgtttcacatttttaacaatgtagttaaaattgataatggaaacatcatccgtctttcctctaatgatttatgctgccaaaaaatttccaattg |
118 |
Q |
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| T |
40460223 |
gatttatgtttcacatttttaacaatgtagttaaaattgataatggaaacatcatccgtctttcctctaatgatttatgctgccaaaaaatttccaattg |
40460322 |
T |
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| Q |
119 |
ggtacagttattttactttgacaatcagaacttgaaagacagttcctagtgtatcttggtaacttttgtttgctgtagataaaaagaaaaattataatgt |
218 |
Q |
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| T |
40460323 |
ggtacagtcattttactttgacaaccagaacttgaaagacagttcctagtgtatcttggtaacttttgtttgctgtagataaaaagaaaaattataatgt |
40460422 |
T |
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| Q |
219 |
aatgctttggaaatttgattgatttgtgagagtttatagttgacaccgtgaaaaaatcgaatacttttaaatgtgtttggatgttgttttatggtat |
315 |
Q |
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| T |
40460423 |
aatgctttggaaatttgattgatttgtgagagtttatagttgacaccgtgaaaaaatcgaatacttttaaatgtgtttggatgttgttttatggtat |
40460519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 329 - 429
Target Start/End: Original strand, 40460547 - 40460644
Alignment:
| Q |
329 |
tttatgggttaacttttgggattgttcttaaaattgtgtgtggaagaggagagtttgacttacttattagtatatcgtttacttaccagtattagtatta |
428 |
Q |
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| T |
40460547 |
tttatgggttaacttttgggattgttcttaaaattttgtgtggaagaggagagtttgacttac---ttagtatatcgtttacttaccagtattagtatta |
40460643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 40437896 - 40437937
Alignment:
| Q |
33 |
atttttaacaatgtagttaaaattgataatggaaacatcatc |
74 |
Q |
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| T |
40437896 |
atttttaataatgttgttaaaattgataatggaaacatcatc |
40437937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 25457111 - 25457070
Alignment:
| Q |
33 |
atttttaacaatgtagttaaaattgataatggaaacatcatc |
74 |
Q |
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| T |
25457111 |
atttttaataatgttgttaaaattgataatggaaacatcatc |
25457070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 36482740 - 36482700
Alignment:
| Q |
269 |
aaaaaatcgaatacttttaaatgtgtttggatgttgtttta |
309 |
Q |
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| T |
36482740 |
aaaaaatcgaatatttttggatgtgtttggatgttgtttta |
36482700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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