View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_14 (Length: 433)
Name: NF6063_high_14
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 36467890 - 36467475
Alignment:
| Q |
1 |
agaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaatgcattcttctttttgcatactaattgacgcataataatgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467890 |
agaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaatgcattcttctttttgcatactaattgacgcataataatgttc |
36467791 |
T |
|
| Q |
101 |
ccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaaacaatacataaaactccgtagcttcatcctctgtgttgaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467790 |
ccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaaacaatacataaaactccgtagcttcatcctctgtgttgaatt |
36467691 |
T |
|
| Q |
201 |
ccatatcctttacatcatcatctgtcacatcattgatgcatttgtaaccatcaaagttctttttcccttgctcattgcaaacaccattaccatggtttaa |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467690 |
ccatatcccttacatcatcatctgtcacatcattgatgcatttgtaaccatcaaagttctttttcccttgctcattgcaaacaccattaccatggtttaa |
36467591 |
T |
|
| Q |
301 |
ttccacaccgtctgcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactatcaatgtcactatcagtgtcaacatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467590 |
ttccacaccgtctgcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactatcaatgtcactatcagtgtcaacatca |
36467491 |
T |
|
| Q |
401 |
ttaacacaattaaatt |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
36467490 |
ttaacacaattaaatt |
36467475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 215 - 374
Target Start/End: Complemental strand, 28738898 - 28738738
Alignment:
| Q |
215 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtct |
313 |
Q |
| |
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||||||| |||||||| | | |||||||||||||||| | |||| |||||||||||||| |||||||||||||||||||||| ||||||| || | || |
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| T |
28738898 |
tcatcatttgtcacattactaatgcatttgtaaccattggaattctcttttcccttgctcactgcaaacaccattaccatggttgaattccatactgcct |
28738799 |
T |
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| Q |
314 |
gcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactat |
374 |
Q |
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|||||| |||| ||||||||| | || | |||| |||| |||||||||||||||||||| |
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| T |
28738798 |
acatctctatcactacgaacattgatgtcgttattgacttctatatcttcagtatcactat |
28738738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 353
Target Start/End: Complemental strand, 28718587 - 28718448
Alignment:
| Q |
215 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtct |
313 |
Q |
| |
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||||||| ||||||||| ||||||||||||| |||| | | |||| ||||| ||||||| |||||||||||||||||||||| |||| || | || || |
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| T |
28718587 |
tcatcattggtcacatcactgatgcatttgtagccattagaattctcttttcaattgctcactgcaaacaccattaccatggttgaatttcatatcgcct |
28718488 |
T |
|
| Q |
314 |
gcatctccatcagtacgaacatcgttgctgctattaactt |
353 |
Q |
| |
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| ||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
28718487 |
gtatctctatcagtacgaacatcgttgccgctattaactt |
28718448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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