View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_17 (Length: 420)
Name: NF6063_high_17
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 27391635 - 27391312
Alignment:
| Q |
19 |
acacatatcatcattattactgttcatctttcatcttatgtctttgcttctgaaagaaagtattttcaatgtcttgcttctgaaccattaaagctataca |
118 |
Q |
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| T |
27391635 |
acacatatcatcattattaatgttcatctttcatcttatgtctttgcttctgaaag----tattttcaatgtcttgcttctgaaccattaaagctataca |
27391540 |
T |
|
| Q |
119 |
gaacatgaagnnnnnnnnn-cttaatctatttcatcgagcatctttgaaccattaaattatttttaatgtcttgcttctggcctattaacgttactagtg |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27391539 |
gaacatgaagaaaaaaaaaacttaatctatttcatcgagcatctttgaaccattaaattatttttaatgtcttgcttctagcctattaacgttactagtg |
27391440 |
T |
|
| Q |
218 |
tccggtcnnnnnnngttcctccttcaatttaaacacctcacaaaacttaccttccttcatagcatttatttcatcgaccatctttcctgaactgcaaaat |
317 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27391439 |
tctggtctttttttgttcctccttcaatttaaacacctcacaaaacttaccttccagcatagcatttatttcatcgaccatctttcctgaactgcaaaat |
27391340 |
T |
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| Q |
318 |
ttcagaagcagttttaacaggcagaacc |
345 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27391339 |
ttcagaagcagttttaacaggcagaacc |
27391312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 401
Target Start/End: Complemental strand, 27391274 - 27391245
Alignment:
| Q |
372 |
aatgttggtgctaacattactactgcacct |
401 |
Q |
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| T |
27391274 |
aatgttggtgctaacattactactgcacct |
27391245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 10256060 - 10255742
Alignment:
| Q |
11 |
cacagaggacacatatcatcattattactgttcatctttcatcttatgtctttgcttctgaaagaaagtattttcaatgtcttgcttctgaaccattaaa |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10256060 |
cacagaggacacatatcatcattattaatgttcatctttcatcttatgtctttgcttctgaaag----tattttcaatgtcttgcttctgaaccattaaa |
10255965 |
T |
|
| Q |
111 |
gctatacagaacatgaagnnnnnnnnn----cttaatctatttcatcgagcatctttgaaccattaaattatttttaatgtcttgcttctggcctattaa |
206 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255964 |
gctatacagaaaatgaagaaaaaaaaaaaaacttaatctatttcatcgagcatctttgtaccattaaattatttttaatgtcttgcttctggcctattaa |
10255865 |
T |
|
| Q |
207 |
cgttactagtgtccggtcnnnnnnngttcctccttcaatttaaacacctcacaaaacttaccttccttcatagcatttatttcatcgaccatctttcctg |
306 |
Q |
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| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255864 |
cattactagtgtctcgtctttttttgttcctccttcaatttaaacacctcacaaaacttaccttccttcatagcatttatttcatcgaccatctttcctg |
10255765 |
T |
|
| Q |
307 |
aactgcaaaatttcagaagcagt |
329 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
10255764 |
aactgcaaaatttcagaagcagt |
10255742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 26778317 - 26778271
Alignment:
| Q |
232 |
gttcctccttcaatttaaacacctcacaaaacttaccttccttcata |
278 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || |||||||||| |
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| T |
26778317 |
gttcctccttcaatttaaacacctcataaaactgactttccttcata |
26778271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 53600856 - 53600819
Alignment:
| Q |
181 |
ttaatgtcttgcttctggcctattaacgttactagtgt |
218 |
Q |
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|||||||||||||||| ||||||| ||||||||||||| |
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| T |
53600856 |
ttaatgtcttgcttcttgcctattcacgttactagtgt |
53600819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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