View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_2 (Length: 800)
Name: NF6063_high_2
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 715; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 11 - 800
Target Start/End: Original strand, 38819814 - 38820596
Alignment:
| Q |
11 |
catcatcatcctaagcagtggtgtaccttgttcgttaagttagaaaacaatgactactatgtcatagtaacttaagaaaatgagaattaattcctaaaca |
110 |
Q |
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| T |
38819814 |
catcatcatcctaagcagtggtgtaccttgttcgttaagttagaaaacaatgactactatgtcatagtaacttaagaaaatgagaattaattcctaaaca |
38819913 |
T |
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| Q |
111 |
tgtcagtttcgattccacaaacatatataggagctgtcaatgtttaggaggnnnnnnnnttcctcaaaaaatttactttaatcagtgctgtcaatcatgg |
210 |
Q |
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| T |
38819914 |
tgtcagtttcgattccacaaacatatataggagctgtcaatgtttaggaggaaaaaaaattcctcaaaaaatttactttaatcagtgctgtcaatcatgg |
38820013 |
T |
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| Q |
211 |
attccataaaatagcagtttgttcaatttcaattataccacaatactataatcaccatttgatgacactttatactaaatcaggtttgtagagtaataag |
310 |
Q |
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| T |
38820014 |
attccataaaatagcagtttgttcaatttcaattataccacaatactataatcaccatttgatgacactttatactaaatcaggtttgtagagtaataag |
38820113 |
T |
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| Q |
311 |
ggtttgttaaaatttctctacactatagcactacagtaccgatcttggacaatactgactatttataaagtgaaaaacatgttattagtgtttgctactc |
410 |
Q |
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| T |
38820114 |
ggtttgttaaaatttctctacactatagcactacagtaccgatcttggacaatactgactatt-ataaagtgaaaaccatgttattagtgtttac----- |
38820207 |
T |
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| Q |
411 |
cacatcattatatatcttcaaagacacataaatactacatgcttaacgcaacaattgtctgcaatgcatagatttagaataaccactaacaccagtaaat |
510 |
Q |
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| T |
38820208 |
-acatcattatatatcttcaaagacacataaatactacatgcttaacgcaacaattgtctacaatgcatagatttagaataaccactaacaccagtaaat |
38820306 |
T |
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| Q |
511 |
ggcaacaagttacaaggtaaaacagacatagacatacttaaaaggccggatgatcagacaaaaattatttacctgtgactgcaaccacctggcaaccttt |
610 |
Q |
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| T |
38820307 |
ggcaacaagttacaaggtaaaacagacatagacatacttaaaaggccggatgatcagacaaaaattatttacctgtgactgcaaccacctggcaaccttt |
38820406 |
T |
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| Q |
611 |
aacgaccgaataccgtgatgacactgcatttagaagtcaagttattgaatatgtatgcaacaaaaataactaaacaactaacttagcttcagtattgaac |
710 |
Q |
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| T |
38820407 |
aacgaccgaataccgtgatgacactgcatttagaagtcaagttattgaatatgtatgcaacaaaaataactaaacaactaacttagcttcagtattgaat |
38820506 |
T |
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| Q |
711 |
aacaaactacaagttctgaagatgaatgaattcaaacatcagaaaacagaggcgtataatacaacaattcaaacttggactgctaaagct |
800 |
Q |
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| T |
38820507 |
aacaaactacaagttctgaagatgaatgaattcaaacatcagaaaacagaggcgtataatacaaccattcaaacttggactgctaaagct |
38820596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 567 - 655
Target Start/End: Original strand, 38813864 - 38813952
Alignment:
| Q |
567 |
gacaaaaattatttacctgtgactgcaaccacctggcaacctttaacgaccgaataccgtgatgacactgcatttagaagtcaagttat |
655 |
Q |
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| T |
38813864 |
gacaaaaactgtttacctgtgactgcaaccacctggcaacctgtaaagaccgcactccgtgatgacactgcattcagaagtcaggttat |
38813952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 38813361 - 38813438
Alignment:
| Q |
84 |
aagaaaatgagaattaattcctaaacatgtcagtttcgattccacaaacatatataggagctgtcaatgtttaggagg |
161 |
Q |
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| T |
38813361 |
aagaacatgagaattgattcctaaatatgtcagttcaaattccaaaaacatatataggaactgtctttgttcaggagg |
38813438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 47037679 - 47037623
Alignment:
| Q |
83 |
taagaaaatgagaattaattcctaaacatgtcagtttcgattccacaaacatatata |
139 |
Q |
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| T |
47037679 |
taagaacatgagaattaattcctaaatatgtcagttccaattcgagaaacatatata |
47037623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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