View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_26 (Length: 367)
Name: NF6063_high_26
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 608265 - 608606
Alignment:
| Q |
19 |
aacctcgacatcctagcatcttgcatttgaacgagtgaactctagttttcagtccgagcaaacatagataaacaaatgtacaatgttggatcctatcaat |
118 |
Q |
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| T |
608265 |
aacctcgacatcctagcatcttgcatttgaacgagtgaactctagttttcagtccgagcaaacatagataaacaaatgtacaatgttggatcctatcaat |
608364 |
T |
|
| Q |
119 |
caatttgtcgttggaatattgggaacatagacttctatttaaaaattcttgcagtattgagactccaattactttagatatatagtcacgagaaatcgtg |
218 |
Q |
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| T |
608365 |
caatttgtcgttggaatattgggaacatagacttctatttaaaatttcttgtagtattgagactccaattactttag--atatagtcacgagggattgtg |
608462 |
T |
|
| Q |
219 |
ttttcgatcatttttgtaagggttcttgttaacaataatatcacataataaaatcatggtaggaaatataatgttttgctttttacatcggagtaaaata |
318 |
Q |
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| T |
608463 |
ttttcgatca-ttttgtaagggttcttgttaacaataatatcaaataataaaatcatggtaggaaatataatgttttgctttttacatcggagtagaaca |
608561 |
T |
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| Q |
319 |
tgagagacttcctcttatttgtgctcattgttatattcttggaca |
363 |
Q |
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| T |
608562 |
tgagagacttcctcttatttgtgctcattgtcatattattggaca |
608606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 3090918 - 3090970
Alignment:
| Q |
57 |
actctagttttcagtccgagcaaacatagataaacaaatgtacaatgttggat |
109 |
Q |
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| T |
3090918 |
actctagacttcagtccgagcaaacaaagataaatcaatgttcaatgttggat |
3090970 |
T |
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