View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_29 (Length: 357)
Name: NF6063_high_29
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 37632974 - 37632627
Alignment:
| Q |
1 |
ttgtacagcagtaagttatgtttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacat |
100 |
Q |
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| T |
37632974 |
ttgtacagcaaaaagttatatttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacat |
37632875 |
T |
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| Q |
101 |
gtttttggtctgtatggctactctctggcaggcaatttttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtc-cccct |
199 |
Q |
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| T |
37632874 |
gtttttggtttgtatggctactctctggcaggcaattttggggttatctttgtatgccttgtcattggtgtatgactgtgtatggtgtattgtcccccct |
37632775 |
T |
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| Q |
200 |
tcgagcacatatagtggaagccttttccaacccttcatagaaggtgggtagaggtatcttgttgtgatgcttgcggcagagtttttaatattttaattca |
299 |
Q |
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| T |
37632774 |
tcgagcacatatagtgtaagccctttccaacccttcatagaaggtgggtagagttatcttgttatgatgcttgcggcagagtttttaatattttaattca |
37632675 |
T |
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| Q |
300 |
tcgagaaaaacaacaaaaatgaagaagtatgaattgcatgtagaataa |
347 |
Q |
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| T |
37632674 |
tcgagaaaaacaacaaaaatgcagaagtatgaattgcatgtagaataa |
37632627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 45220676 - 45220501
Alignment:
| Q |
21 |
tttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttggtctgtatggcta |
120 |
Q |
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| T |
45220676 |
tttgctgctatttttgtttgtttgagtcctagggtgtccatggttgttttatggttcatgtattggtgagttagcaacctgtttttggtttgtatggcat |
45220577 |
T |
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| Q |
121 |
ctctctggcaggcaatttttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtcccc |
197 |
Q |
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| T |
45220576 |
gtctttggtaggaaattttggtgttttatttgctcagcttgccattggt-tatgactttgtgtggtgtattgtcccc |
45220501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 28697503 - 28697333
Alignment:
| Q |
39 |
tgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttggtctgtatggctactctctggcaggcaattt |
138 |
Q |
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| T |
28697503 |
tgtttgagtcctatggtgtccgtggttgttttaaggttcttgtattggtgaattagcaacctgtttttggtctgtatagcatctctttggcgggtaatat |
28697404 |
T |
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| Q |
139 |
ttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtcccccttcgagcacat |
209 |
Q |
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| T |
28697403 |
cggtgttatctttgtatgccttgccattggtgtatgtctttgtatgatctattgtacaccttcgaacacat |
28697333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 18329824 - 18329737
Alignment:
| Q |
21 |
tttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttgg |
108 |
Q |
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| T |
18329824 |
tttgctgctatttttgtttgttcaagtcctatggtgtccatgttgcttttaaggttcatgtattggtgagttagcaacctgtttttgg |
18329737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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