View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_high_3 (Length: 796)

Name: NF6063_high_3
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_high_3
NF6063_high_3
[»] chr5 (4 HSPs)
chr5 (1-717)||(27639396-27640106)
chr5 (723-792)||(27639260-27639329)
chr5 (571-660)||(3465307-3465396)
chr5 (569-650)||(41650524-41650605)
[»] chr4 (9 HSPs)
chr4 (500-699)||(19469578-19469776)
chr4 (568-699)||(45068090-45068221)
chr4 (500-669)||(50655070-50655239)
chr4 (589-667)||(4866798-4866876)
chr4 (570-658)||(23012347-23012435)
chr4 (568-656)||(30251406-30251494)
chr4 (589-660)||(44616665-44616736)
chr4 (568-660)||(24065104-24065196)
chr4 (570-631)||(48309656-48309717)
[»] chr6 (2 HSPs)
chr6 (500-660)||(51924-52084)
chr6 (500-696)||(9557337-9557533)
[»] chr2 (3 HSPs)
chr2 (502-658)||(43411446-43411602)
chr2 (570-631)||(10994432-10994493)
chr2 (567-658)||(41074569-41074659)
[»] chr1 (8 HSPs)
chr1 (571-658)||(13297595-13297682)
chr1 (546-660)||(52372646-52372760)
chr1 (568-669)||(44503950-44504051)
chr1 (568-656)||(21926617-21926704)
chr1 (571-690)||(9644372-9644491)
chr1 (568-690)||(40799649-40799771)
chr1 (568-658)||(25410579-25410669)
chr1 (570-631)||(51871203-51871264)
[»] chr7 (4 HSPs)
chr7 (568-658)||(40188193-40188283)
chr7 (500-630)||(46028474-46028604)
chr7 (568-658)||(23176908-23176998)
chr7 (571-658)||(12258376-12258463)
[»] chr3 (7 HSPs)
chr3 (546-655)||(26982040-26982149)
chr3 (568-658)||(34213146-34213236)
chr3 (570-634)||(1045402-1045466)
chr3 (570-628)||(2833336-2833394)
chr3 (576-616)||(1762040-1762080)
chr3 (568-658)||(4778030-4778120)
chr3 (436-466)||(21396168-21396198)
[»] chr8 (8 HSPs)
chr8 (570-658)||(24604837-24604925)
chr8 (568-660)||(34152023-34152115)
chr8 (568-669)||(42032731-42032832)
chr8 (568-660)||(7656805-7656897)
chr8 (571-660)||(42241233-42241322)
chr8 (568-616)||(41927018-41927066)
chr8 (589-700)||(32073896-32074007)
chr8 (570-631)||(36650463-36650524)
[»] scaffold0329 (1 HSPs)
scaffold0329 (569-660)||(18430-18521)
[»] scaffold0042 (1 HSPs)
scaffold0042 (571-639)||(83243-83311)


Alignment Details
Target: chr5 (Bit Score: 588; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 717
Target Start/End: Complemental strand, 27640106 - 27639396
Alignment:
Q  1 cctcaaaacgattgtatgttgcttttagggctcaattttgcaaacaaaggttagctttatatgtcaagcattaaaaagagaaaaggcaacaactatataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27640106 cctcaaaacgattgtatgttgcttttagggctcaattttgcaaacaaaggttagctttatatgtcaagcattaaaaagagaaaaggcaacaattatataa 27640007  T
Q  101 cctatctattttgaaactatattaaggttttgctataccatatatggataagtgtatattgcatggcttgatgttgatttgatttatagagtggcaagtg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27640006 cctatctattttgaaactatattaaggttttactataccatatatggataagtgtatattgcatggcttgatgttgatttgatttatagagtggcaagtg 27639907  T
Q  201 tgaagaaaatcgaagtaattatgaaattatcaaaaagaaagcacaagnnnnnnnnnnncttctacagaaatgcacaatttattgtaaagttaaattaatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||| |||||||||||||||    
T  27639906 tgaagaaaatcgaagtaattatgaaattatcaaaaagaaagcacaagtttttt------ttctacagaaatgcacaatttattgcaaagttaaattaatt 27639813  T
Q  301 ttagagtttgtatttgaagaatgataaccaattggattgaaaagtttgagtgtaacggaactctttagaaaatgattttatgtgtatttaagtaattaat 400  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27639812 ttagagtttgaatttgaagaatgataaccaattggattgaaaagtttgagtgtaacggaactctttagaaaatgattttatgtgtatttaagtaattaat 27639713  T
Q  401 ttgtttaaaatactaattattattgactttcttttaaaatccaaataaagctcctctaacataagatgtgtcatctggacttatgtttgagtctaaacat 500  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  27639712 ttgtttaaaatactaattattattgactttcttttaaaaactaaataaagcccctccaacacaagatgtgtcatctgaacttatgtttgagtctaaacat 27639613  T
Q  501 gttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgga 600  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  27639612 gttatttggaccatctggacttacataaatgactttatgtttgctggtggcacccatagtgagcagactgtggtggatagagcaaaattcttagcttgga 27639513  T
Q  601 agtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttttgtggtggtggc 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| | |||| |||||||||||||||||||||    
T  27639512 agtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtaggaggtgcaacccgtcctttactgaaattagtagggttttgtggtggtggc 27639413  T
Q  701 ctaccttggttcgcgcg 717  Q
    |||||||||||| ||||    
T  27639412 ctaccttggttcacgcg 27639396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 723 - 792
Target Start/End: Complemental strand, 27639329 - 27639260
Alignment:
Q  723 tgggttctctcttggccttcctcctttggtggcaggtgttttgtgctctttttggtggatctgggctcct 792  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  27639329 tgggttctctcttggccttcctcctttggtggcaggtgttttgcgctctttttggtggatctgtgctcct 27639260  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 571 - 660
Target Start/End: Complemental strand, 3465396 - 3465307
Alignment:
Q  571 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 660  Q
    ||||||||||||| ||| |||||||||||||||| ||| |||| ||  || || ||||||| |||||||| |||||||||||||||||||    
T  3465396 tggtggatagagcgaaactcttagcttggaagtgtttcttggcgaagcgttctactagttcctgcacttaccatgagtgggaggtgcaac 3465307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 569 - 650
Target Start/End: Original strand, 41650524 - 41650605
Alignment:
Q  569 tgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgg 650  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||||| ||  ||||||| || |||||||| |||||||||    
T  41650524 tgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgcacttaccatgagtgg 41650605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 500 - 699
Target Start/End: Original strand, 19469578 - 19469776
Alignment:
Q  500 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 599  Q
    |||||||||||||||||| |||| |  ||||||| || | ||||| |||||| |||||  || | ||  ||||||||||||||| || ||||||||||||    
T  19469578 tgttatttggaccatctgaacttcctggaatgacattttatttgctggtggcgcccattctgaggagcatgtggtggatagagcaaagttcttagcttgg 19469677  T
Q  600 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttttgtggtggtgg 699  Q
    ||||||||| | | ||| |||| ||||||||| |||||||||||||||||||||||| | | ||||||||   || || |||||| ||||||||||||||    
T  19469678 aagtggttcctagttaagtgtc-tgctagttcctgcacttatcatgagtgggaggtgtagcctgtcctttgttggcatcggtaggattttgtggtggtgg 19469776  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 568 - 699
Target Start/End: Complemental strand, 45068221 - 45068090
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 667  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||||| || ||||  ||||| | ||||||||||||| ||||||||||||  |||||    
T  45068221 ctgtagtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacacttatcatgagggggaggtgcaacccgtcct 45068122  T
Q  668 ttacaggaattggtagggttttgtggtggtgg 699  Q
    ||   || ||  ||||||||||||||||||||    
T  45068121 ttgttggtatcagtagggttttgtggtggtgg 45068090  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 500 - 669
Target Start/End: Complemental strand, 50655239 - 50655070
Alignment:
Q  500 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 599  Q
    ||||||||||||||||||||| | |   |||||| |||| ||| | |||||| |||  || | | || ||||| |||||   |||||| |||||||||||    
T  50655239 tgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggcgccctcagagaggagtctgtgatggatcaggctaaactcttagcttgg 50655140  T
Q  600 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtccttt 669  Q
    ||||||||| ||||||| ||||||||||||||||||  ||  ||||||||||||||||||| ||||||||    
T  50655139 aagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtccttt 50655070  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 4866798 - 4866876
Alignment:
Q  589 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 667  Q
    |||||||||||||||||||| ||||||| || | ||||||| |||||||||||||||||||||||||||||| ||||||    
T  4866798 tcttagcttggaagtggttcctggctaagtgccttgctagtccttgcacttatcatgagtgggaggtgcaacctgtcct 4866876  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 658
Target Start/End: Complemental strand, 23012435 - 23012347
Alignment:
Q  570 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    |||||||||||||  ||| |||||| |||||| |||||||||||||| |||  ||||||||  |||||||||||||| |||||||||||    
T  23012435 gtggtggatagagtgaaactcttagtttggaattggttcatggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgca 23012347  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 656
Target Start/End: Complemental strand, 30251494 - 30251406
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtg 656  Q
    |||||||||||||||  ||| |||| ||||| ||||||||| ||||||| || ||||  ||||||||| ||  ||||||||||||||||    
T  30251494 ctgtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtg 30251406  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 589 - 660
Target Start/End: Complemental strand, 44616736 - 44616665
Alignment:
Q  589 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 660  Q
    |||||||||| |||||| ||||||||||  | | ||||| ||||||||||||  ||||||||||||||||||    
T  44616736 tcttagcttgtaagtggctcatggctaagggccttgctaattcttgcacttacgatgagtgggaggtgcaac 44616665  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 568 - 660
Target Start/End: Complemental strand, 24065196 - 24065104
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 660  Q
    |||||||||||||||  ||| ||||| | |||||||||||||||||||| |  ||||||||||| ||   |||| |||| |||||||| ||||    
T  24065196 ctgtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaac 24065104  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 48309717 - 48309656
Alignment:
Q  570 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 631  Q
    |||||||||||||  ||| ||||||||||||||| ||||  |||||| | ||||||||||||    
T  48309717 gtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagttc 48309656  T

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Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 500 - 660
Target Start/End: Original strand, 51924 - 52084
Alignment:
Q  500 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 599  Q
    ||||||||||||||||||||| | |   |||||| |||| ||| | |||||| |||  || | | || || |||||||| |||||||| |||||||||||    
T  51924 tgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggctccctcagagaggagcctatggtggatcgagctaaactcttagcttgg 52023  T
Q  600 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 660  Q
    ||||||||| ||||||| |||| |||||||||||||||||   ||||||||||||||||||    
T  52024 aagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgcaac 52084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 500 - 696
Target Start/End: Complemental strand, 9557533 - 9557337
Alignment:
Q  500 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 599  Q
    ||||||||||||||||| ||| | |   |||||| |||| | ||| |||||||||||| |||    | | ||||||||| | || |||||||||||||||    
T  9557533 tgttatttggaccatcttgacgtcccgaaatgaccttatttctgctggtggcacccattgtgataggtcggtggtggatggggcaaaattcttagcttgg 9557434  T
Q  600 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttttgtggtgg 696  Q
    ||||| ||| || |||| ||||||||||| || |||||||||||||||||||||||||| |  ||||||| | ||  |||||||||||| |||||||    
T  9557433 aagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttgctggctttggtagggtttggtggtgg 9557337  T

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Target: chr2 (Bit Score: 61; Significance: 9e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 502 - 658
Target Start/End: Original strand, 43411446 - 43411602
Alignment:
Q  502 ttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaa 601  Q
    ||||||||||||||||||| | | |||||||| || ||||| | |||||  | | | ||| | || || ||||||||||||| ||| |||||||||| ||    
T  43411446 ttatttggaccatctggacgtcccagaatgaccttgtgttttctggtggtgctcgtggtgtggagtctttggtggatagagcgaaactcttagcttgaaa 43411545  T
Q  602 gtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    ||| ||| ||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  43411546 gtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgca 43411602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 10994432 - 10994493
Alignment:
Q  570 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 631  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||| || |||||||||||    
T  10994432 gtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttc 10994493  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 658
Target Start/End: Complemental strand, 41074659 - 41074569
Alignment:
Q  567 actgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    ||||||||||| | ||| ||| |||||||||| ||||||||| ||||||| || ||||||||| ||| ||||| |||||||||| |||||||    
T  41074659 actgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctagtcctt-cacttttcatgagtggaaggtgca 41074569  T

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Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 571 - 658
Target Start/End: Original strand, 13297595 - 13297682
Alignment:
Q  571 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    ||||||||||||  ||| |||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13297595 tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgca 13297682  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 546 - 660
Target Start/End: Original strand, 52372646 - 52372760
Alignment:
Q  546 ggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatg 645  Q
    |||||| ||||||||| |  | |||||||||||||||| ||| ||||||||| |||||||||| ||||||  || ||||||||||| ||| ||| | |||    
T  52372646 ggtggcgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatg 52372745  T
Q  646 agtgggaggtgcaac 660  Q
    |||||||||||||||    
T  52372746 agtgggaggtgcaac 52372760  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 568 - 669
Target Start/End: Complemental strand, 44504051 - 44503950
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 667  Q
    |||||||||||| ||  ||  ||||||||||||||||||||||| |||| |||| || |||||| ||| ||| |||||||||||||||||| || |||||    
T  44504051 ctgtggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtcct 44503952  T
Q  668 tt 669  Q
    ||    
T  44503951 tt 44503950  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 568 - 656
Target Start/End: Original strand, 21926617 - 21926704
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtg 656  Q
    |||||||||||||||  ||| ||||||| |||||||||||| ||||||| || ||||||||||| ||  ||||||||||||||||||||    
T  21926617 ctgtggtggatagagtgaaactcttagcctggaagtggttc-tggctaagtgccctgctagttcatgttcttatcatgagtgggaggtg 21926704  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 690
Target Start/End: Original strand, 9644372 - 9644491
Alignment:
Q  571 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtccttta 670  Q
    ||||||||||||| ||| |||| | ||||||||||||| | ||||| |||||| ||||||||||| | | |||||| |||||||| || || |||||||     
T  9644372 tggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttcttgctcctttcatgaatgggaggtacatctcgtcctttg 9644471  T
Q  671 caggaattggtagggttttg 690  Q
    | || || ||||||||||||    
T  9644472 ctggcatcggtagggttttg 9644491  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 568 - 690
Target Start/End: Original strand, 40799649 - 40799771
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 667  Q
    |||||||||||||||  ||| |||| ||||| |||| |||| | ||||| ||   ||||||||||||| ||| |||||||||||||||||| || |||||    
T  40799649 ctgtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgcagctcgtcct 40799748  T
Q  668 ttacaggaattggtagggttttg 690  Q
    || | || || ||||||||||||    
T  40799749 ttgctggcatcggtagggttttg 40799771  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 658
Target Start/End: Complemental strand, 25410669 - 25410579
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    ||||| |||||||||  ||| |||||||||||||||||||| ||||||| |  | ||||||||| ||| |||   ||||||||||||||||    
T  25410669 ctgtgatggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgca 25410579  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 51871203 - 51871264
Alignment:
Q  570 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 631  Q
    ||||||||||||  |||| |||||||||||||||||||| || |||| || |||||||||||    
T  51871203 gtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttc 51871264  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 568 - 658
Target Start/End: Complemental strand, 40188283 - 40188193
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    |||||||||||| ||| ||| || ||||||||||||||||| || |||| || |||||||||||||||||||||||||||| |||||||||    
T  40188283 ctgtggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgca 40188193  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 500 - 630
Target Start/End: Complemental strand, 46028604 - 46028474
Alignment:
Q  500 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 599  Q
    |||||||||||||||||| |||| |  ||||||| || | ||| | | |||  ||||||||| |  | |||||||||||||||| ||| |||||||||||    
T  46028604 tgttatttggaccatctgaacttcccggaatgaccttgttttttctgatggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg 46028505  T
Q  600 aagtggttcatggctaaatgtcctgctagtt 630  Q
    ||||||||| ||||||| |||||||||||||    
T  46028504 aagtggttcctggctaagtgtcctgctagtt 46028474  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 568 - 658
Target Start/End: Complemental strand, 23176998 - 23176908
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    |||||||| ||||||  ||| |||||||||||||| ||||| | || || |||| ||||||||| |||||||||||||||| |||||||||    
T  23176998 ctgtggtgtatagagtgaaactcttagcttggaagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgca 23176908  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 658
Target Start/End: Original strand, 12258376 - 12258463
Alignment:
Q  571 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    |||||||||||| |||| |||||||||| ||||||||| ||||||| |||||||| ||| | ||| ||    ||||||||||||||||    
T  12258376 tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgca 12258463  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 546 - 655
Target Start/End: Complemental strand, 26982149 - 26982040
Alignment:
Q  546 ggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatg 645  Q
    |||||||||| | ||| | || |||||||||||||||  ||| |||||||||||||||||||| ||||||| || ||||| ||||| ||||| |||||||    
T  26982149 ggtggcacccttcgtgaggagcctgtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatcatg 26982050  T
Q  646 agtgggaggt 655  Q
    ||||||||||    
T  26982049 agtgggaggt 26982040  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 568 - 658
Target Start/End: Original strand, 34213146 - 34213236
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    |||| ||||||||||  ||| |||||||||||||||||||||||||||| || | ||||||||| ||||||||||| ||||| ||||||||    
T  34213146 ctgttgtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgca 34213236  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 634
Target Start/End: Complemental strand, 1045466 - 1045402
Alignment:
Q  570 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttg 634  Q
    ||||||||||| | |||| ||| |||||||||||||||| ||||||| || ||||||||||||||    
T  1045466 gtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagttcttg 1045402  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 628
Target Start/End: Complemental strand, 2833394 - 2833336
Alignment:
Q  570 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctag 628  Q
    ||||| |||||||  ||| |||||||||||||||||||||||||||| || ||||||||    
T  2833394 gtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctag 2833336  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 576 - 616
Target Start/End: Complemental strand, 1762080 - 1762040
Alignment:
Q  576 gatagagctaaattcttagcttggaagtggttcatggctaa 616  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  1762080 gatagagcgaaactcttagcttggaagtggttcatggctaa 1762040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 568 - 658
Target Start/End: Original strand, 4778030 - 4778120
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    ||||||||||||||| |||| |||||| |||||||||||||  |||||  || ||||||||| | ||| ||    ||||||||||||||||    
T  4778030 ctgtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgca 4778120  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 466
Target Start/End: Original strand, 21396168 - 21396198
Alignment:
Q  436 aaaatccaaataaagctcctctaacataaga 466  Q
    |||||||||||||||||||||||||||||||    
T  21396168 aaaatccaaataaagctcctctaacataaga 21396198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 570 - 658
Target Start/End: Original strand, 24604837 - 24604925
Alignment:
Q  570 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 658  Q
    |||||||||||||| ||| |||||| ||| ||||||||| ||||||| || |||||||||| || | ||||||||||||||||||||||    
T  24604837 gtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgca 24604925  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 568 - 660
Target Start/End: Complemental strand, 34152115 - 34152023
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 660  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||||||  | |||   ||||| ||||||| ||||||||||||||||||||    
T  34152115 ctgttgtggatagagctaaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgcaac 34152023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 568 - 669
Target Start/End: Original strand, 42032731 - 42032832
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 667  Q
    |||||||| ||||||| ||| |||||||||||||||||||| ||||||| || ||||||| ||| ||| | | | ||||||||||||||||||  |||||    
T  42032731 ctgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtcct 42032830  T
Q  668 tt 669  Q
    ||    
T  42032831 tt 42032832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 568 - 660
Target Start/End: Complemental strand, 7656897 - 7656805
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 660  Q
    |||||||||||||||  ||| |||||  ||||||||||||| |  |||| |||||| ||| |||||||||||||||| |||| ||||||||||    
T  7656897 ctgtggtggatagagtgaaactcttaatttggaagtggttcctaactaagtgtcctactaattcttgcacttatcattagtgagaggtgcaac 7656805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 660
Target Start/End: Complemental strand, 42241322 - 42241233
Alignment:
Q  571 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 660  Q
    ||||||||| ||| ||| |||||||||||||||||||| |||| ||  |  || ||||||| |||||||| | |||||||||||||||||    
T  42241322 tggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgcaac 42241233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 568 - 616
Target Start/End: Original strand, 41927018 - 41927066
Alignment:
Q  568 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaa 616  Q
    |||||||||||||||| ||  |||||||||||||||||||| |||||||    
T  41927018 ctgtggtggatagagcgaatctcttagcttggaagtggttcctggctaa 41927066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 700
Target Start/End: Complemental strand, 32074007 - 32073896
Alignment:
Q  589 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttt 688  Q
    |||||| ||||||||| ||  ||||||| |||||| ||||||| ||| | | | |||||||||||| ||| |  ||||| ||| ||||  ||||||| ||    
T  32074007 tcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggaggcgcagcccgtcctgtactggaaccggtagggctt 32073908  T
Q  689 tgtggtggtggc 700  Q
    ||||||||||||    
T  32073907 tgtggtggtggc 32073896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 36650524 - 36650463
Alignment:
Q  570 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 631  Q
    |||||||| |||| |||| ||||||||||| ||||||||  |||||| |||| |||||||||    
T  36650524 gtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttc 36650463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 569 - 660
Target Start/End: Complemental strand, 18521 - 18430
Alignment:
Q  569 tgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 660  Q
    ||||||||||||||| ||| || ||| ||| ||||| |||  |||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  18521 tgtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaac 18430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 571 - 639
Target Start/End: Complemental strand, 83311 - 83243
Alignment:
Q  571 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcactt 639  Q
    ||||||||| ||  ||| ||||||||||||||||||||||| | || ||||||||||||||||||||||    
T  83311 tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagttcttgcactt 83243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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