View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_35 (Length: 336)
Name: NF6063_high_35
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 32247955 - 32247637
Alignment:
| Q |
1 |
atgtttgtctggagattgatgcatggaaaggtccctactaatgagaactaaatgattagaggctgcaacatttcatcaatgtgcaatgtgtgttttatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || |
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| T |
32247955 |
atgtttgtctggagattgatgcatggaaaggtccctactaatgagaactaaatgattagaggctgcaacattccatcaatgtgcaatttgtgttttaaac |
32247856 |
T |
|
| Q |
101 |
atgtagaatctttatttcatattttcttcacttgctcatatgctgtaaaattgcggtcatggttggcttctgcactcaatatatctttaaatttctatag |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32247855 |
atgtagaatcttcatttcatattttcttcacttgctcatatgctgtaaaattgtggtcatggttggcttctgcactcaatatatctttaaatttctatag |
32247756 |
T |
|
| Q |
201 |
cctacaggaggtttggaaagtttgtgatttaccttggtctcctcaatgtaaggttgtaattttatctgctttgatcaacttatttaacagcatctggttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32247755 |
cctacaggaggtttggaaagtttgtgatttaccttggtctcctcaatgtaaggttgtaattttatctgctttgatcaacttatttaacagcatctggttt |
32247656 |
T |
|
| Q |
301 |
gctagaaatcaagcaagat |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
32247655 |
gctagaaatcaagcaagat |
32247637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 43577013 - 43576714
Alignment:
| Q |
1 |
atgtttgtctggagattgatgcatggaaaggtccctactaatgagaactaaatgattagaggctgcaacatttcatcaatgtgcaatgtgtgttttatac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| | ||||| ||| || |
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| T |
43577013 |
atgtttgtctggagattgatgcatggaaaggtccctactgatgagaacttaatgattagaggctgcaacattccatcaatgtgcagtttgtgtcttaaac |
43576914 |
T |
|
| Q |
101 |
atgtagaatctttatttcatattttcttcacttgctcatatgctgtaaaattgcggtcatggttggcttctgcactcaatatatctttaaatttctatag |
200 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||| || | || |||||||||||||||||| |||||| ||| |
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| T |
43576913 |
atgtagaatcttcatttcatattttcttcacttgttcatatgctgtaaaactgtg------------ttttgcactcaatatatctttgaatttcgctag |
43576826 |
T |
|
| Q |
201 |
cctacaggaggtttggaaagtttgtgatttaccttggtctcctcaatgtaaggttgtaattttatctgctttgatcaacttatttaacagcatctggttt |
300 |
Q |
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|||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43576825 |
cctagaggagctttggaaagtttgcgatttaccttggtctcctcaatgtaaggttgttattttatctgctttgatcaacttatttaacagcatctggttt |
43576726 |
T |
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