View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_high_38 (Length: 312)
Name: NF6063_high_38
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 82 - 296
Target Start/End: Complemental strand, 5585510 - 5585296
Alignment:
| Q |
82 |
caataaagcattcacttaataccaacacaaaccattgttctctcnnnnnnnccacaatgacttctacaccaactcctccaccaaactactccttagtccc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5585510 |
caataaagcattcacttaataccaacacaaaccattgttctctctttttttccacaatgacttctacaccaactcctccaccaaactactccttagtccc |
5585411 |
T |
|
| Q |
182 |
tgctccaagacctgctgaaaacaatcgaaatcacaatcaccacaatagtcataaacggcataaaaaccgctggtcttcctccttaaagtctgcacctgtt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5585410 |
tgctccaagacctgctgaaaacaatcgaaatcacaatcaccacaatagtcataaacggcataaaaaccgttggtcttcttccttaaagtctgcacctgtt |
5585311 |
T |
|
| Q |
282 |
gttgcagctaaaatg |
296 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5585310 |
gttgcagctaaaatg |
5585296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 82 - 296
Target Start/End: Complemental strand, 5590471 - 5590257
Alignment:
| Q |
82 |
caataaagcattcacttaataccaacacaaaccattgttctctcnnnnnnnccacaatgacttctacaccaactcctccaccaaactactccttagtccc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5590471 |
caataaagcattcacttaataccaacacaaaccattgttctctctttttttccacaatgacttctacaccaactcctccaccaaactactccttagtccc |
5590372 |
T |
|
| Q |
182 |
tgctccaagacctgctgaaaacaatcgaaatcacaatcaccacaatagtcataaacggcataaaaaccgctggtcttcctccttaaagtctgcacctgtt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5590371 |
tgctccaagacctgctgaaaacaatcgaaatcacaatcaccacaatagtcataaacggcataaaaaccgttggtcttcttccttaaagtctgcacctgtt |
5590272 |
T |
|
| Q |
282 |
gttgcagctaaaatg |
296 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5590271 |
gttgcagctaaaatg |
5590257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 5604820 - 5604870
Alignment:
| Q |
135 |
acaatgacttctacaccaactcctccaccaaactactccttagtccctgct |
185 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
5604820 |
acaatgacttctacaccaacccctccaccaaactactcctcactccctgct |
5604870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5586219 - 5586182
Alignment:
| Q |
1 |
ttgtctttcgcagcacaaaatgaataatctcaaaagttat |
40 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5586219 |
ttgtctttcgcagcacaaa--gaataatctcaaaagttat |
5586182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5591180 - 5591143
Alignment:
| Q |
1 |
ttgtctttcgcagcacaaaatgaataatctcaaaagttat |
40 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5591180 |
ttgtctttcgcagcacaaa--gaataatctcaaaagttat |
5591143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University