View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_high_39 (Length: 312)

Name: NF6063_high_39
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_high_39
NF6063_high_39
[»] chr5 (1 HSPs)
chr5 (1-294)||(18097484-18097777)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 18097777 - 18097484
Alignment:
Q  1 acagatatagtaaaagttaacnnnnnnncttcaagtctgctgctgtctatatgataccaagtaactaccagcctttagaagcgtgtttggtatactgaga 100  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18097777 acagatatagtaaaagttaactttttttcttcaagtctgctgctgtctatatgataccaagtaactaccagcctttagaagcgtgtttggtctactgaga 18097678  T
Q  101 tatccaccatgaaaactatatcaaaagcacgtcaaatgtagcaagcatgctgaacctgaattcaaaacaataggttcatataattatgcctttaaatatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18097677 tatccaccatgaaaactatatcaaaagcacgtcaaatgtagcaagcatgctgaacctgaattcaaaacaataggttcatataattatgcctttaaatatt 18097578  T
Q  201 acagtagatgtgaataaaattaaatcaaacagtgttctgtcaatatgattaataaaatcaaaaccaagtgtatgatccttttttcacttaaaga 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18097577 acagtagatgtgaataaaattaaatcaaacagtgttctgtcaatatgattaataaaatcaaaaccaagtgtatgatccttttttcacttaaaga 18097484  T

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