View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_4 (Length: 576)
Name: NF6063_high_4
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Original strand, 47457188 - 47457600
Alignment:
| Q |
11 |
cagagacagtcacatatatatagtaggtcactaaaaggaagagtggattttggtgaatatatgatttctaaaatggttagatcatacgagcctagaatta |
110 |
Q |
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| T |
47457188 |
cagagacagtcacatatatatagtaggtcactaaaaggaagagtggattttggtgaatatatgatttctaaaatggttagatcatacgagcctagaatta |
47457287 |
T |
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| Q |
111 |
attcgatactctgattatgactgatgtgatgataaagttgagtggaaaaatgctatttgctatatgtttaagcttctaaatgcctcagtctcttggttct |
210 |
Q |
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| T |
47457288 |
attcgatactctgattatgactgatgtgatgataaagttgagtggaaaaatgctatttgctatatgtttaagcttctaaatgcctcagtctcttggttct |
47457387 |
T |
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| Q |
211 |
tgaagaagtagttattaatgatagtcttgtcaacatgcgaagctgagcacatagtagtctcttatgttgcttgtcatgcattatgtggcttgacaaagaa |
310 |
Q |
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| T |
47457388 |
tgaagaagtaattattagtgatagtcttgt------------ctgagcacatagtagtctcttatgttgcttgtcatgcattatgtggcttgacaaagaa |
47457475 |
T |
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| Q |
311 |
tctagtttcatatggtaggagtaaacgcaattagagtcaattctgttttctttgtgaccaagtgaataaaggtagaattggcagtgatgctaagtttagt |
410 |
Q |
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| T |
47457476 |
tctagtttcatatggtaggagtaaacgcaattagagtcaattctgttttctttgcgaccaagtgaataaaggtagaattggcagtgatgctaagtttagt |
47457575 |
T |
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| Q |
411 |
gtcaataagtgattttgaataataa |
435 |
Q |
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| T |
47457576 |
gtcaataagtgattttgaataataa |
47457600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 429 - 558
Target Start/End: Original strand, 47457636 - 47457765
Alignment:
| Q |
429 |
ataataatttgcgatttccatggactgtgatttttgccttaataccgatggtgctttgaagcaaacgactagattggcgggttgtggtggattgattcga |
528 |
Q |
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| T |
47457636 |
ataatcatttgcgatttccatggactgtgatttttgccttaataccgatggtgctttgaagcaaacgactagattggcgggttgtggtggattgattcga |
47457735 |
T |
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| Q |
529 |
tatgattgtggaaggtggtgtgaaggtctt |
558 |
Q |
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| T |
47457736 |
gatgattgtggaaggtggtgtgaaggtctt |
47457765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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