View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_high_44 (Length: 285)

Name: NF6063_high_44
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_high_44
NF6063_high_44
[»] scaffold0027 (1 HSPs)
scaffold0027 (18-203)||(2686-2871)
[»] chr5 (7 HSPs)
chr5 (18-203)||(34574331-34574515)
chr5 (18-131)||(39938583-39938695)
chr5 (20-84)||(30248426-30248490)
chr5 (18-100)||(40600114-40600196)
chr5 (18-84)||(12156076-12156142)
chr5 (18-100)||(42269035-42269117)
chr5 (19-84)||(42221207-42221272)
[»] chr6 (6 HSPs)
chr6 (21-140)||(32747828-32747947)
chr6 (18-115)||(30845219-30845316)
chr6 (18-93)||(24842983-24843058)
chr6 (18-84)||(24350448-24350514)
chr6 (18-82)||(10772691-10772754)
chr6 (109-141)||(30845332-30845364)
[»] chr1 (6 HSPs)
chr1 (18-115)||(10494634-10494730)
chr1 (18-93)||(14351443-14351518)
chr1 (31-117)||(11814459-11814545)
chr1 (16-100)||(2077651-2077736)
chr1 (128-189)||(15495753-15495812)
chr1 (128-203)||(27786938-27787011)
[»] chr8 (2 HSPs)
chr8 (18-100)||(5515117-5515199)
chr8 (94-151)||(25142796-25142853)
[»] chr7 (3 HSPs)
chr7 (18-100)||(43047922-43048004)
chr7 (18-98)||(24717843-24717923)
chr7 (18-74)||(26711963-26712019)
[»] chr2 (6 HSPs)
chr2 (18-93)||(14951089-14951164)
chr2 (18-93)||(38531611-38531686)
chr2 (18-100)||(33544192-33544274)
chr2 (94-140)||(28165014-28165060)
chr2 (19-84)||(6186532-6186597)
chr2 (19-75)||(9910414-9910470)
[»] scaffold0974 (1 HSPs)
scaffold0974 (16-100)||(2637-2721)
[»] chr3 (2 HSPs)
chr3 (18-84)||(3460726-3460791)
chr3 (25-82)||(31699040-31699097)
[»] chr4 (3 HSPs)
chr4 (18-82)||(55728462-55728525)
chr4 (18-100)||(7971546-7971628)
chr4 (18-82)||(52635480-52635544)


Alignment Details
Target: scaffold0027 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 2686 - 2871
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcaccatctagaaaacacatagc 117  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2686 catcaaacctaccaaaaattcttgcaactgcaccttgcttctcttctgcagttgagggcaattaagcgcaagtaaaatcaccatctagaaaacacatagc 2785  T
Q  118 tcaattcttgaaacaagctacaccgtttaacatctatttatttgcaaaaacctcatcaacaacaaactcataagagaaaatccaca 203  Q
    ||||||||||||||||||||| |||| ||||||| || |||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  2786 tcaattcttgaaacaagctacgccgtctaacatccatgtatttgtaaaaaccccatcaacaacgaactcataagagaaaatccaca 2871  T

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Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 34574515 - 34574331
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcaccatctagaaaacacatagc 117  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  34574515 catcaaacctaccaaaaaatcgtgcaaccgcaccttgcttctcttctacagttgagcgcaattaaacacaggtaaaatcaccacctagaaaacacatagc 34574416  T
Q  118 tcaattcttgaaacaagctacaccgtttaacatctatttatttgcaaaaacctcatcaacaacaaactcataagagaaaatccaca 203  Q
    |||||| |||||||||||||||  || ||||||| || |||||| | ||||| |||||||||||||||||||  |||||| |||||    
T  34574415 tcaatttttgaaacaagctacattgtctaacatccatgtatttg-agaaaccacatcaacaacaaactcatagaagaaaacccaca 34574331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 39938583 - 39938695
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcaccatctagaaaacacatagc 117  Q
    |||||||||||| ||||| | |||||||||||||||||||||||| ||||| | |  ||| |||||| ||||||||||||||| ||||||||||||||||    
T  39938583 catcaaacctac-aaaaacctgtgcaaccgcaccttgcttctcttatgcagctcaatgcatttaagcccaggtaaaatcaccacctagaaaacacatagc 39938681  T
Q  118 tcaattcttgaaac 131  Q
    ||||||||||||||    
T  39938682 tcaattcttgaaac 39938695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 30248426 - 30248490
Alignment:
Q  20 tcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagc 84  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||    
T  30248426 tcaaacctaccaaaaaatcgtgcaaccgtaccttgcttctcttctgcagttgagcgcaattaagc 30248490  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 40600196 - 40600114
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcacca 100  Q
    ||||||||||||||||||  |||  ||| |||| |||||||||||||||||||||||||| |||||| | |||||||||||||    
T  40600196 catcaaacctaccaaaaactcgtataactgcactttgcttctcttctgcagttgagcgcagttaagcactggtaaaatcacca 40600114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 12156076 - 12156142
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagc 84  Q
    ||||||||||||||||||  || | || |||||||||||||||||| ||||||||||||||||||||    
T  12156076 catcaaacctaccaaaaactcgcgtaatcgcaccttgcttctcttcagcagttgagcgcaattaagc 12156142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 42269117 - 42269035
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcacca 100  Q
    |||||| |||||||||||  || | |||||||| |||||||||||||||||||||||| | |||||| || ||||||||||||    
T  42269117 catcaatcctaccaaaaactcgggtaaccgcactttgcttctcttctgcagttgagcgtagttaagcacaagtaaaatcacca 42269035  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 42221207 - 42221272
Alignment:
Q  19 atcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagc 84  Q
    |||||||||||||||||   |||||||||||||||||||||| ||||||||||| ||| |||||||    
T  42221207 atcaaacctaccaaaaacttgtgcaaccgcaccttgcttctcatctgcagttgaacgccattaagc 42221272  T

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Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 32747947 - 32747828
Alignment:
Q  21 caaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcaccatctagaaaacacatagctca 120  Q
    |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||    
T  32747947 caaacctaacaaaaaatcgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaatcacaggtaaaatcaccacctagaaaacacatagctca 32747848  T
Q  121 attcttgaaacaagctacac 140  Q
    ||||||||||||||||||||    
T  32747847 attcttgaaacaagctacac 32747828  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 30845219 - 30845316
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcaccatctagaaaacacata 115  Q
    |||||||||||||||||||||  | |||||||||||||||||||||| |||||||||||| |||||| || |||||||||||| ||||||||||||||    
T  30845219 catcaaacctaccaaaaatccaggtaaccgcaccttgcttctcttctacagttgagcgcagttaagcacaagtaaaatcaccacctagaaaacacata 30845316  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 24842983 - 24843058
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaa 93  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  24842983 catcaaacctaccaaaaacccgtgtaaccgcaccttgcttctcttctgcagttgagcgcaattaagcacatgtaaa 24843058  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 24350514 - 24350448
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagc 84  Q
    |||||||| |||||||||  |||| || | ||| |||||||||||||| ||||||||||||||||||    
T  24350514 catcaaacttaccaaaaactcgtgtaatcacacattgcttctcttctgtagttgagcgcaattaagc 24350448  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 10772691 - 10772754
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaa 82  Q
    |||||||||||||||||| ||||| ||| |||  |||||||||||||| |||||| |||| ||||    
T  10772691 catcaaacctaccaaaaacccgtgtaactgca-tttgcttctcttctgtagttgaacgcagttaa 10772754  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 30845332 - 30845364
Alignment:
Q  109 acacatagctcaattcttgaaacaagctacacc 141  Q
    ||||||||||||||||||||||||| |||||||    
T  30845332 acacatagctcaattcttgaaacaaactacacc 30845364  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 10494634 - 10494730
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcaccatctagaaaacacata 115  Q
    |||||||||||||||||||||||| |||||||| ||  |||||||||||||||||||| | |||||| || || ||||||||| ||||||||||||||    
T  10494634 catcaaacctaccaaaaatccgtgtaaccgcactttctttctcttctgcagttgagcgtagttaagcacatgt-aaatcaccacctagaaaacacata 10494730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 14351518 - 14351443
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaa 93  Q
    ||||||||||||||||||  || | || ||||| |||||||||||| |||||||||||||||||||| || |||||    
T  14351518 catcaaacctaccaaaaactcgcgtaatcgcacattgcttctcttcagcagttgagcgcaattaagcacatgtaaa 14351443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 11814459 - 11814545
Alignment:
Q  31 aaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcaccatctagaaaacacatagc 117  Q
    ||||||||||| ||| |||| |||||||||||||||||||||   || |||| | | ||||||||||| | ||||||||||||||||    
T  11814459 aaaaatccgtgtaactgcactttgcttctcttctgcagttgattacagttaaccacgggtaaaatcactacctagaaaacacatagc 11814545  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 2077736 - 2077651
Alignment:
Q  16 atcatcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgc--aattaagcgcaggtaaaatcacca 100  Q
    ||||||||||||||||||| ||| || |||||||| || ||| |||||||||||| |||||  ||||||||  ||||||||||||||    
T  2077736 atcatcaaacctaccaaaactcc-tgtaaccgcactttacttttcttctgcagttcagcgcgcaattaagcataggtaaaatcacca 2077651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 15495753 - 15495812
Alignment:
Q  128 aaacaagctacaccgtttaacatctatttatttgcaaaaacctcatcaacaacaaactcata 189  Q
    |||||||| ||||||| ||||||| || ||||||  ||||||||||||||||||||||||||    
T  15495753 aaacaagccacaccgtctaacatccatgtatttg--aaaacctcatcaacaacaaactcata 15495812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 27787011 - 27786938
Alignment:
Q  128 aaacaagctacaccgtttaacatctatttatttgcaaaaacctcatcaacaacaaactcataagagaaaatccaca 203  Q
    |||||||| ||||| | |||||||  | ||||||  |||||| |||||||||||||||||||| |||||| |||||    
T  27787011 aaacaagccacaccatctaacatccgtgtatttg--aaaaccccatcaacaacaaactcataaaagaaaacccaca 27786938  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 5515117 - 5515199
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcacca 100  Q
    |||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||    
T  5515117 catcaatcctaccaaaaacccgggtaaccgcactttgcttctcttctgcagttgagcgcagttaagcacaagtaaaatcacca 5515199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 25142796 - 25142853
Alignment:
Q  94 atcaccatctagaaaacacatagctcaattcttgaaacaagctacaccgtttaacatc 151  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||    
T  25142796 atcaccacctagaaaacacatagctcaattcttgaaacaagctacactgtctaacatc 25142853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 43048004 - 43047922
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcacca 100  Q
    |||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |||||| |  ||||||||||||    
T  43048004 catcaaacctaccaaaaatctgtgtaaccgcactttgtttctcttctgcagttgagcgcagttaagcacgagtaaaatcacca 43047922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 24717843 - 24717923
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcac 98  Q
    |||||| ||||||||||| ||  | |||||||| ||||||||||| |||||||||||||| |||||| || ||||||||||    
T  24717843 catcaatcctaccaaaaaaccaggtaaccgcactttgcttctcttttgcagttgagcgcagttaagcacaagtaaaatcac 24717923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 26711963 - 26712019
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagc 74  Q
    |||||||||||||||||| || || |||||||||||| |||||||| ||| ||||||    
T  26711963 catcaaacctaccaaaaacccatgtaaccgcaccttgattctcttccgcacttgagc 26712019  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 14951164 - 14951089
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaa 93  Q
    ||||||||||||||||||  |||| || ||||| ||||||||||||||||||||||||||||||||| || |||||    
T  14951164 catcaaacctaccaaaaactcgtgtaatcgcacattgcttctcttctgcagttgagcgcaattaagcacatgtaaa 14951089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 38531686 - 38531611
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaa 93  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || |||||| || |||||    
T  38531686 catcaaacctaccaaaaacccgtgtaaccgcaccttgcttttcttctgcagttgagcacagttaagcacatgtaaa 38531611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 33544192 - 33544274
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcacca 100  Q
    |||||| ||||||||||| ||||||| ||||||||||||| |||||||||||| | ||||||||||  || ||||||||||||    
T  33544192 catcaaccctaccaaaaacccgtgcagccgcaccttgcttatcttctgcagttcaacgcaattaagaacatgtaaaatcacca 33544274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 28165060 - 28165014
Alignment:
Q  94 atcaccatctagaaaacacatagctcaattcttgaaacaagctacac 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  28165060 atcaccatttagaaaacacatagctcaattcttgaaacaagctacac 28165014  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 6186597 - 6186532
Alignment:
Q  19 atcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagc 84  Q
    ||||||| |||||||||  |||| || ||||| || ||||||||||||||||||||||||||||||    
T  6186597 atcaaacttaccaaaaactcgtgtaatcgcactttacttctcttctgcagttgagcgcaattaagc 6186532  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9910414 - 9910470
Alignment:
Q  19 atcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcg 75  Q
    ||||| |||||||||||  |||| ||||| || ||| ||||||||||||||||||||    
T  9910414 atcaatcctaccaaaaactcgtgtaaccgtactttgtttctcttctgcagttgagcg 9910470  T

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Target: scaffold0974 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 2721 - 2637
Alignment:
Q  16 atcatcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcacca 100  Q
    |||||||| |||||||||||  | || |||||||| ||||||||||||||||||| |||||  |||||| |||||||||||||||    
T  2721 atcatcaatcctaccaaaaactcatgtaaccgcactttgcttctcttctgcagttcagcgcggttaagcacaggtaaaatcacca 2637  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 3460791 - 3460726
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagc 84  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||  ||||||||||    
T  3460791 catcaaacctaccaaaaatccgtgcaaccgcactttgcttctaatctgca-ttgaatgcaattaagc 3460726  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 31699040 - 31699097
Alignment:
Q  25 cctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaa 82  Q
    ||||||||||| ||||| ||||||||  ||||||||||||||||||||||||| ||||    
T  31699040 cctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagcgcagttaa 31699097  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 55728462 - 55728525
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaa 82  Q
    ||||||||||||||||| || ||| || ||||| |||||| ||||||||||||||||||||||||    
T  55728462 catcaaacctaccaaaactc-gtgtaatcgcactttgcttttcttctgcagttgagcgcaattaa 55728525  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 7971628 - 7971546
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaagcgcaggtaaaatcacca 100  Q
    ||||||||||| | |||||| |||||||| || ||||| ||| |||||| | ||||| ||||||||| ||| |||||||||||    
T  7971628 catcaaacctatctaaaatctgtgcaaccacatcttgcctcttttctgccgctgagcacaattaagcacagataaaatcacca 7971546  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 52635480 - 52635544
Alignment:
Q  18 catcaaacctaccaaaaatccgtgcaaccgcaccttgcttctcttctgcagttgagcgcaattaa 82  Q
    ||||||||||||||||||  |||| || | ||| ||||||||||||||||| |||| ||||||||    
T  52635480 catcaaacctaccaaaaactcgtgtaatcacacattgcttctcttctgcaggtgagtgcaattaa 52635544  T

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