View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_45 (Length: 285)
Name: NF6063_high_45
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 1020022 - 1020306
Alignment:
| Q |
1 |
gaatttttaatgtttcaaaataatcctcgaaattgaatatctcggatcatgttagtacttttaggtagttcaattagat---------aatatcaggttt |
91 |
Q |
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| T |
1020022 |
gaatttttaatatttcaaaacagtcctcgaaattgaaaatctcggatcatgttagtacttttaggtagtccaatttgattccattgctaatatcaggttt |
1020121 |
T |
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| Q |
92 |
ccaatgtttaggattattggaattggtcatgggatgaattagtagcatatgatcttccagcaacattccagtatgtgcatgatcaaaccggacaaaaact |
191 |
Q |
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| T |
1020122 |
caaatgtttaggattattggaattggtcatgggatgaattagttgcatatgatcttccagcaacattccagtatgtgcatgatcaaactggacaaaaact |
1020221 |
T |
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| Q |
192 |
acactatgttggtcactcgcaggtga-ttaattggtgaatttttgtaagttttcacctattcataaatataattcaatgtgatga |
275 |
Q |
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| T |
1020222 |
acactacgttggtcactcataggtgatttaattggttaatttttgtaagtttttacctcttcatatatataattcaatttgatga |
1020306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36645776 - 36645533
Alignment:
| Q |
1 |
gaatttttaatgtttcaaaataatcctcgaaattgaatat-ctcggatcatgttagtacttttaggtagttcaattagat---------aatatcaggtt |
90 |
Q |
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| T |
36645776 |
gaatgtttaatatttcaaaatagtctttgaaattgaaaattctcggatcatgttagtacgtttagatagtccaatttgattccattgctaatatcaggtt |
36645677 |
T |
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| Q |
91 |
tccaatgtttaggattattggaattggtcatgggatgaattagtagcatatgatcttccagcaacattccagtatgtgcatgatcaaaccggacaaaaac |
190 |
Q |
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| T |
36645676 |
tccaatgtttaggattattggaattggtcatgggatgaattagtagcatatgatcttccagcaacattccagtatgtgcatgatcaaactggacaaaaac |
36645577 |
T |
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| Q |
191 |
tacactatgttggtcactcgcaggtgattaattggtgaattttt |
234 |
Q |
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| T |
36645576 |
tgcattatgttggtcactcacaggtgattaattgctgaattttt |
36645533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 30904322 - 30904354
Alignment:
| Q |
99 |
ttaggattattggaattggtcatgggatgaatt |
131 |
Q |
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| T |
30904322 |
ttaggcttattggaattggtcatgggatgaatt |
30904354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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