View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_47 (Length: 280)
Name: NF6063_high_47
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 33218174 - 33218440
Alignment:
| Q |
1 |
attccattgagctaaggaattttttaaagggggtgctattagtaggtcaaatagatttttactaataaatgttgatcatgtagctgattttgatgaatga |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33218174 |
attccattgagctaaggaaatttttaaagggggtgctattagtaggtcaaatagatttttactaataaatgttgatcatgtagctgattttgatgaatga |
33218273 |
T |
|
| Q |
101 |
aaagtgtaggtcaatttggctctcatggagtttttggtcaaggtaatgtttgtgaaagtagattgatggatctccttcatggttcagaatatgtcctcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33218274 |
aaagtgtaggtcaatttggctctcatggagtttttggtcaaggtaatgtttgtgaaagtagattgatggatctccttcatggttcagaatatgtcctcac |
33218373 |
T |
|
| Q |
201 |
ctatgaagataaagatggtgattggatgctagttggtgatgttccatggaagtaagtgcatattttg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33218374 |
ctatgaagataaagatggtgattggatgctagttggtgatgttccatggaagtaagtgcatattttg |
33218440 |
T |
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Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 43392206 - 43392104
Alignment:
| Q |
152 |
gtgaaagtagattgatggatctccttcatggttcagaatatgtcctcacctatgaagataaagatggtgattggatgctagttggtgatgttccatggaa |
251 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||| | |
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| T |
43392206 |
gtgaaagtagattggtggatctccttcatggttcagaatatgtgcttacctatgaagacaaggatggtgattggatgctagttggtgatgttccatggga |
43392107 |
T |
|
| Q |
252 |
gta |
254 |
Q |
| |
|
||| |
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|
| T |
43392106 |
gta |
43392104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 28201761 - 28201656
Alignment:
| Q |
152 |
gtgaaagtagattgatggatctccttcatggttcagaatatgtcctcacctatgaagataaagatggtgattggatgctagttggtgatgttccatggaa |
251 |
Q |
| |
|
|||| |||| ||||| ||| |||| |||||||| |||||||| |||| |||||||||||||||||||| |||||||| || || ||||| |||||| | |
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| T |
28201761 |
gtgagagtaaattgaaggacttcctgcatggttctgaatatgtggtcacttatgaagataaagatggtgactggatgcttgtaggagatgtaccatggga |
28201662 |
T |
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| Q |
252 |
gtaagt |
257 |
Q |
| |
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|||||| |
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| T |
28201661 |
gtaagt |
28201656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 28452428 - 28452517
Alignment:
| Q |
168 |
ggatctccttcatggttcagaatatgtcctcacctatgaagataaagatggtgattggatgctagttggtgatgttccatggaagtaagt |
257 |
Q |
| |
|
|||||| |||||||| ||||||||||| | || ||||| ||||||||||||||||||||||| || ||||||||||| ||| ||||||| |
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| T |
28452428 |
ggatctgcttcatgggtcagaatatgttattacttatgaggataaagatggtgattggatgcttgtcggtgatgttccctgggagtaagt |
28452517 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 13124106 - 13124028
Alignment:
| Q |
178 |
catggttcagaatatgtcctcacctatgaagataaagatggtgattggatgctagttggtgatgttccatggaagtaag |
256 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| || |||||||| || || || || |||||| |||||| |
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| T |
13124106 |
catggttcagaatatgttctcacttatgaagataaagatggagactggatgcttgtaggggacgtaccatgggagtaag |
13124028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 33848651 - 33848604
Alignment:
| Q |
202 |
tatgaagataaagatggtgattggatgctagttggtgatgttccatgg |
249 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
33848651 |
tatgaagataaagatggtgattggatgttagttggagatgttccatgg |
33848604 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 33945327 - 33945374
Alignment:
| Q |
202 |
tatgaagataaagatggtgattggatgctagttggtgatgttccatgg |
249 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
33945327 |
tatgaagataaagatggtgattggatgttagttggagatgttccatgg |
33945374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 15064585 - 15064643
Alignment:
| Q |
199 |
acctatgaagataaagatggtgattggatgctagttggtgatgttccatggaagtaagt |
257 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||| |||||||||||| ||||||| |
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| T |
15064585 |
acctatgaagacaaggatggtgactggatgctagttggagatgttccatgggagtaagt |
15064643 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 31370760 - 31370815
Alignment:
| Q |
202 |
tatgaagataaagatggtgattggatgctagttggtgatgttccatggaagtaagt |
257 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| ||| ||||||| |
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|
| T |
31370760 |
tatgaagacaaagatggtgattggatgcttgttggagatgttccttgggagtaagt |
31370815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 35974623 - 35974580
Alignment:
| Q |
202 |
tatgaagataaagatggtgattggatgctagttggtgatgttcc |
245 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
35974623 |
tatgaagacaaagatggtgattggatgcttgttggtgatgttcc |
35974580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 43635399 - 43635332
Alignment:
| Q |
163 |
ttgatggatctccttcatggttcagaatatgtcctcacctatgaagataaagatggtgattggatgct |
230 |
Q |
| |
|
|||| |||||| |||||||| || || ||||| || || ||||||||||||||||| ||||||||||| |
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| T |
43635399 |
ttgagggatcttcttcatggatctgagtatgttcttacatatgaagataaagatggagattggatgct |
43635332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 44155799 - 44155863
Alignment:
| Q |
199 |
acctatgaagataaagatggtgattggatgctagttggtgatgttccatggaagtaagtgcatat |
263 |
Q |
| |
|
|||||||| |||||||||||||| |||||| | |||| ||||| || ||||||||||| ||||| |
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|
| T |
44155799 |
acctatgaggataaagatggtgactggatgttgcttggggatgtaccctggaagtaagttcatat |
44155863 |
T |
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