View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_48 (Length: 276)
Name: NF6063_high_48
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 38820550 - 38820804
Alignment:
| Q |
8 |
aaacataggcgtataatacaaccattcaaacttggactgctaaagctgtacttacaagaacatatgtattcttttgaagatccaatttggtgtttatttc |
107 |
Q |
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| T |
38820550 |
aaacagaggcgtataatacaaccattcaaacttggactgctaaagctgtacttacaagaacatatgtattcttttgaagatccaatttggtgtttatttc |
38820649 |
T |
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| Q |
108 |
aggcacccaggttccaaattgaaggaggggaagaaccataaatcctggcaaagacgctttgtccctgtgtataatgagagtatcattatacactaaag-- |
205 |
Q |
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| T |
38820650 |
aggcacccaggttccaaattgaaggaggggaagaaccataaatcctggcaaagacgctttgtccctgtgtataatgagagtatcattatacactaaagaa |
38820749 |
T |
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| Q |
206 |
nnnnnnnnntagatgcataaaagtgtaagctactaaatgaatatcccattcaatc |
260 |
Q |
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| T |
38820750 |
aaaaaaaaatagatgcataaaagtgtaagctactaaatgaatatcccattcaatc |
38820804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 31 - 195
Target Start/End: Original strand, 38814072 - 38814236
Alignment:
| Q |
31 |
attcaaacttggactgctaaagctgtacttacaagaacatatgtattcttttgaagatccaatttggtgtttatttcaggcacccaggttccaaattgaa |
130 |
Q |
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| T |
38814072 |
attcaaacttggactgctaaagttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtc |
38814171 |
T |
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| Q |
131 |
ggaggggaagaaccataaatcctggcaaagacgctttgtccctgtgtataatgagagtatcatta |
195 |
Q |
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| T |
38814172 |
gaaggggaagaactgtaaatcctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatta |
38814236 |
T |
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