View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_high_5 (Length: 543)

Name: NF6063_high_5
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_high_5
NF6063_high_5
[»] chr3 (5 HSPs)
chr3 (9-528)||(2821356-2821875)
chr3 (351-527)||(2834828-2834994)
chr3 (64-149)||(48196786-48196871)
chr3 (388-527)||(2771858-2771991)
chr3 (32-122)||(46574483-46574573)
[»] chr1 (3 HSPs)
chr1 (64-149)||(23539739-23539823)
chr1 (65-194)||(40569674-40569804)
chr1 (390-441)||(11114579-11114630)
[»] chr5 (2 HSPs)
chr5 (64-149)||(16397967-16398052)
chr5 (189-303)||(7379937-7380048)
[»] chr8 (1 HSPs)
chr8 (31-109)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (189-293)||(15999232-15999333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (94-191)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (153-230)||(42286518-42286593)


Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 9 - 528
Target Start/End: Complemental strand, 2821875 - 2821356
Alignment:
Q  9 gagatgaaactatacaagacctttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttga 108  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821875 gagatgaaactatacaagacctttgttgaagttgtgggattttaaagataagaatgagagaaaataataagaaccttgaatgttattgatactgacttga 2821776  T
Q  109 ttgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821775 ttgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaa 2821676  T
Q  209 ctctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaagatatcataagatatattct 308  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2821675 ctctaatcctaagagatgctcttataaggttataaactaattgcaggaaataacttccgatactctaatacaatattaaagatattataagatatattct 2821576  T
Q  309 atgattcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821575 atgattcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgat 2821476  T
Q  409 taacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2821475 taacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcattagcatcaatcttgattagccgaataaacaaattcattcaaatgaa 2821376  T
Q  509 atggttttgattattattac 528  Q
    ||||||||||||||||||||    
T  2821375 atggttttgattattattac 2821356  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 527
Target Start/End: Original strand, 2834828 - 2834994
Alignment:
Q  351 gaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaa 450  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    || ||| |||| |||| ||||||||||||| | |||||||||||||   |||    
T  2834828 gaaatgatggatggatgaaaccggttggctgagacgcatacata----tcgtccagatttactttaaatcaactaggcgtttaaatttacagctacataa 2834923  T
Q  451 tgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttgattattatta 527  Q
     |||||      | ||||| ||| || |||||  |||||| | ||||||||| ||||| ||||||||||||||||||    
T  2834924 cgatag------tagcatcgatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattatta 2834994  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 48196871 - 48196786
Alignment:
Q  64 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 149  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| ||| |||| ||||||| |||| |||||| | ||||||| ||||    
T  48196871 gagagaaaataataagaacctggaatattatttatattgactcgatagtaggttgatacaaaagactaaaccctaatccctgttta 48196786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 527
Target Start/End: Complemental strand, 2771991 - 2771858
Alignment:
Q  388 atacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaat 487  Q
    |||||||||| |||||  ||||||||||||||||||||||| | || | |||||||| | | |||||||      | ||||||| |||| |||||  |||    
T  2771991 atacatacatatcctctcgattaacttcaaatcaactaggcctttatagttacagctagattatgatag------tagcatcaagcttggttagcaaaat 2771898  T
Q  488 aaacaaattcattcaaatgaaatggttttgattattatta 527  Q
    ||||| |||||||  |||||| | ||||||||||||||||    
T  2771897 aaacatattcatttgaatgaagtagttttgattattatta 2771858  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 46574573 - 46574483
Alignment:
Q  32 tgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac 122  Q
    |||||||||||||  | |||| | |||| ||| |||||  ||||||||||||||||||  ||||||||||||||  || ||| ||||||||    
T  46574573 tgttgaagttgtgagaatttagataaaagaataagagatgataataagaaccttgaatagtattgatactgactgaatagtactttgatac 46574483  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 23539823 - 23539739
Alignment:
Q  64 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 149  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||| |||| ||||| | ||||||||||| | ||||||||||||    
T  23539823 gagagaaaataataagacctttgaatattattgata-tgacttgatagtagcttgatccaaaaggctaaaccctaatccctattta 23539739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 40569804 - 40569674
Alignment:
Q  65 agagaaaataataagaaccttg-aatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaa 163  Q
    |||||||||||||||||||| | |||||||||||||||| ||  || |||| ||||||| |||  || ||  | |||||||||||| || |||| ||  |    
T  40569804 agagaaaataataagaacctcggaatgttattgatactggctgaatagtagcttgatacaaaaaactcaattctaatccctatttatagcgatacacgga 40569705  T
Q  164 ttcaaccttaaatcaagaacaaatcataata 194  Q
     |||| | |||||||||||||||||| ||||    
T  40569704 ctcaatcctaaatcaagaacaaatcaaaata 40569674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 11114579 - 11114630
Alignment:
Q  390 acatacatgtcctcctgattaacttcaaatcaactaggcatataaatttaca 441  Q
    ||||||||||||| |||||||||||||||||||| |  ||| ||||||||||    
T  11114579 acatacatgtccttctgattaacttcaaatcaaccacacatctaaatttaca 11114630  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 16397967 - 16398052
Alignment:
Q  64 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 149  Q
    ||||||||||||||| |||||||||| || |||||||| | |  || |||| ||||| |||||| ||||| || ||||||||||||    
T  16397967 gagagaaaataataaaaaccttgaatattgttgatactaattgaatagtagcttgatcccaaagactaaatactaatccctattta 16398052  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 303
Target Start/End: Complemental strand, 7380048 - 7379937
Alignment:
Q  189 ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa 288  Q
    |||||| ||||  ||||||| | |||||| || |||||||||   ||| || |||||||||   ||||||||||||  |||| ||||||| |||||||||    
T  7380048 ataataataagtaatataaaatttaatcccaatagatactct---aagattgtaaactaattctaggaaataacttaagatattctaatataatattaaa 7379952  T
Q  289 gatatcataagatat 303  Q
    | ||| |||||||||    
T  7379951 gttattataagatat 7379937  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 10723775 - 10723853
Alignment:
Q  31 ttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgat 109  Q
    |||||||| ||||| ||||||| | |||   | ||||||||||||||||||| |||||| ||||||||| | |||||||    
T  10723775 ttgttgaaattgtgcaattttagataaatggacgagagaaaataataagaactttgaatattattgataataacttgat 10723853  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 15999232 - 15999333
Alignment:
Q  189 ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa 288  Q
    |||||| ||||  ||||||| || |||||||||||||||||   |||| |||||||||||||| | || |||||||  |||||| ||||| |||||  ||    
T  15999232 ataataataagtaatataaaatcaaatcctaagagatactc---taagattataaactaatcatatgacataacttaagatactttaatataatatcgaa 15999328  T
Q  289 gatat 293  Q
    |||||    
T  15999329 gatat 15999333  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 32200 - 32103
Alignment:
Q  94 ttgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcata 191  Q
    |||||| ||||||||| |||| ||||||| |||  || || || |||||||||||| ||||||| | | | |||| | | ||||||||||||||||||    
T  32200 ttgataatgacttgatagtaggttgatacaaaaaactgaatactaatccctatttatagggatacatagactcaatcatgaatcaagaacaaatcata 32103  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 42286518 - 42286593
Alignment:
Q  153 ggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagagatactct 230  Q
    ||||| ||||| |||| |||||||||||| ||||||| |||| ||| | || |||||||| |||||||||||||||||    
T  42286518 ggatacacaaactcaatcttaaatcaagaccaaatcaaaataataaca-at-taaactctgatcctaagagatactct 42286593  T

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