View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_high_59 (Length: 246)

Name: NF6063_high_59
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_high_59
NF6063_high_59
[»] chr5 (2 HSPs)
chr5 (5-236)||(7581123-7581354)
chr5 (87-187)||(41583555-41583655)
[»] chr8 (3 HSPs)
chr8 (114-186)||(24733211-24733283)
chr8 (116-186)||(35209927-35209997)
chr8 (87-154)||(27734367-27734434)
[»] chr7 (3 HSPs)
chr7 (87-186)||(2347429-2347528)
chr7 (108-174)||(44677384-44677450)
chr7 (86-168)||(18219096-18219180)
[»] chr2 (4 HSPs)
chr2 (87-186)||(24765347-24765446)
chr2 (108-210)||(43791885-43791987)
chr2 (150-186)||(22440138-22440174)
chr2 (114-186)||(34233917-34233989)
[»] chr1 (2 HSPs)
chr1 (116-186)||(28441604-28441674)
chr1 (116-177)||(23931209-23931270)
[»] chr3 (1 HSPs)
chr3 (114-167)||(4305156-4305209)
[»] chr4 (1 HSPs)
chr4 (114-174)||(16556006-16556066)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 7581354 - 7581123
Alignment:
Q  5 ttgcaaagttgcaccttctaccaatgcatgtctacaactatattaatatcatactcatgttaacgagcgctcttaggttcctaaatttagaaattattcc 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  7581354 ttgcaaagttgcaccttctacgaatgcatgtctacaactatattaatatcatactcatgctaacgagcgctcttagggtcctaaatttagaaattattcc 7581255  T
Q  105 aacaaaatatcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaagaacattccaaggacattcg 204  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||| |||||||||  ||    
T  7581254 aacaaaaaatcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaagatacttaaagggcatcccaaggacacccg 7581155  T
Q  205 ttaacacttctcttaatattatattacctttg 236  Q
    ||||||||||||||||||||||||||||||||    
T  7581154 ttaacacttctcttaatattatattacctttg 7581123  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 41583555 - 41583655
Alignment:
Q  87 aaatttagaaattattccaacaaaatatcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaaga 186  Q
    ||||||||||||||||||  |||||  | ||||||||||||||| |||| ||| |||||||  ||||| || |||| |||||||| ||| | ||||||||    
T  41583555 aaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaaga 41583654  T
Q  187 a 187  Q
    |    
T  41583655 a 41583655  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 24733211 - 24733283
Alignment:
Q  114 tcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaaga 186  Q
    |||||| |||||||||  | || ||| | ||||| ||||||||| ||||||||||||||||||||||||||||    
T  24733211 tcaaatgttacaaattacagtgcattgattacacaaatttttataaaaacttactattaaaggtacttaaaga 24733283  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 35209997 - 35209927
Alignment:
Q  116 aaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaaga 186  Q
    |||| |||||||||| ||||||||||  |||| |||||| || ||||||| ||||||||||| ||||||||    
T  35209997 aaatgttacaaattccaatgtattaatcacacaaattttaataaaaacttcctattaaaggttcttaaaga 35209927  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 27734434 - 27734367
Alignment:
Q  87 aaatttagaaattattccaacaaaatatcaaatattacaaattctaatgtattaaatacacgaatttt 154  Q
    ||||||||||||||||||  |||||  || |||||||||||||| |||| ||| |||||||| |||||    
T  27734434 aaatttagaaattattccttcaaaaagtctaatattacaaattccaatgcattgaatacacggatttt 27734367  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 2347429 - 2347528
Alignment:
Q  87 aaatttagaaattattccaacaaaatatcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaaga 186  Q
    |||||||| || ||||||   |||| |||||||||||||||||  |||| ||| | ||||  |||||| || |||| |||||||||||||| ||||||||    
T  2347429 aaatttagtaaatattcctcaaaaaaatcaaatattacaaatttcaatgcattgattacataaattttaataaaaatttactattaaaggtgcttaaaga 2347528  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 44677384 - 44677450
Alignment:
Q  108 aaaatatcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaa 174  Q
    ||||| ||||||||||||||||  |||| |||||||| | |||||| ||| |||| |||||||||||    
T  44677384 aaaatgtcaaatattacaaattacaatgcattaaatatatgaatttctataaaaatttactattaaa 44677450  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 18219180 - 18219096
Alignment:
Q  86 taaatttagaaattattccaacaaaatatcaaatattacaaattc--taatgtattaaatacacgaatttttatgaaaacttact 168  Q
    ||||||||||||||||||    ||||  |||||||||| ||||||  ||||| ||| ||||||||| ||||||| ||||||||||    
T  18219180 taaatttagaaattattctttaaaaaactcaaatattataaattctataatgcattgaatacacgagtttttataaaaacttact 18219096  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 24765347 - 24765446
Alignment:
Q  87 aaatttagaaattattccaacaaaatatcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaaga 186  Q
    ||||||||||| ||||||   |||| |||||||||||||||||| |||| ||| | |||||  |||||||| | |||||||||  || ||| ||||||||    
T  24765347 aaatttagaaaatattccttaaaaaaatcaaatattacaaattccaatgcattgattacacatatttttataataacttactagaaatggtccttaaaga 24765446  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 43791987 - 43791885
Alignment:
Q  108 aaaatatcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaagaacattccaaggacattcgtta 207  Q
    |||| ||||||| ||||||||||||||| ||||| || |   |||||||| |||||||| ||||||||||  ||||| |  ||||| | |||| ||||||    
T  43791987 aaaaaatcaaatgttacaaattctaatgcattaattatatagatttttataaaaacttattattaaaggtgtttaaaaagtattccgatgacactcgtta 43791888  T
Q  208 aca 210  Q
    |||    
T  43791887 aca 43791885  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 22440174 - 22440138
Alignment:
Q  150 atttttatgaaaacttactattaaaggtacttaaaga 186  Q
    ||||| || ||||||||||||||||||||||||||||    
T  22440174 attttcataaaaacttactattaaaggtacttaaaga 22440138  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 34233989 - 34233917
Alignment:
Q  114 tcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaaga 186  Q
    ||||||||||||||||  |||| ||| | ||||| |||||  || |||| |||||||||||||| ||||||||    
T  34233989 tcaaatattacaaatttcaatgcattgattacacaaatttgaataaaaatttactattaaaggtgcttaaaga 34233917  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 28441604 - 28441674
Alignment:
Q  116 aaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggtacttaaaga 186  Q
    |||| |||||||||| ||  |||||| |||||  |||||||| |||||||||||||||||||  |||||||    
T  28441604 aaatgttacaaattccaaaatattaattacacatatttttataaaaacttactattaaaggtgtttaaaga 28441674  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 23931270 - 23931209
Alignment:
Q  116 aaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaaggt 177  Q
    |||| ||||||||||||||  || ||||||||||||||| || ||||  |||||||||||||    
T  23931270 aaatgttacaaattctaattaataaaatacacgaattttcataaaaatctactattaaaggt 23931209  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 4305209 - 4305156
Alignment:
Q  114 tcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttac 167  Q
    |||||||||| ||||||||||||||| | ||||||| |||| || |||||||||    
T  4305209 tcaaatattataaattctaatgtattgattacacgatttttcataaaaacttac 4305156  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 16556006 - 16556066
Alignment:
Q  114 tcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaa 174  Q
    ||||||||||||||||  |||| ||| | ||||| ||||||||| |||||||| |||||||    
T  16556006 tcaaatattacaaatttcaatgcattgattacacaaatttttataaaaacttattattaaa 16556066  T

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