View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_high_63 (Length: 239)

Name: NF6063_high_63
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_high_63
NF6063_high_63
[»] chr6 (5 HSPs)
chr6 (1-198)||(13643240-13643447)
chr6 (104-223)||(13638707-13638822)
chr6 (146-223)||(13646240-13646317)
chr6 (5-55)||(13646093-13646143)
chr6 (4-48)||(13638597-13638642)
[»] chr8 (2 HSPs)
chr8 (2-51)||(31910338-31910387)
chr8 (4-49)||(31903004-31903049)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 13643240 - 13643447
Alignment:
Q  1 ttgctaaaatggaccattgtccacaacagatcacatttttcattcaatctctatt----------tcatcaattttacacaaatgccaaagnnnnnnnnn 90  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||          ||||||||||||||||||||||||||             
T  13643240 ttgctaaaatgaaccattgtccacaacatatcacatttttcattcaatctcttttatacactctttcatcaattttacacaaatgccaaagaaaaaacaa 13643339  T
Q  91 nnncggnnnnnnngtggtccaaacattacacacaatgcagctagcacacctctgcccccagcctgcaaattcaagccttacattttgtcatcttcttcga 190  Q
       |||       ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  13643340 aaacggtttttttgtggtccaaacattacacacagtgcagctagcactcctctgcccccagcctgcaaattcaagccttacattttgtcatcttcctcaa 13643439  T
Q  191 ctaacatt 198  Q
    ||||||||    
T  13643440 ctaacatt 13643447  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 13638707 - 13638822
Alignment:
Q  104 gtggtccaaacattacacacaatgcagctagcacacctctgcccccagcctgcaaattcaagccttacattttgtcatcttcttcgactaacattcacct 203  Q
    |||||| |||||||||||||| ||||||    ||  |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  13638707 gtggtctaaacattacacacagtgcagc----acgtctctgccctcagcctgcaaattcaagccttacattttgtcatcttcctcaactaacattcacct 13638802  T
Q  204 taaacctaatgtgtcactat 223  Q
    ||||||||||| || |||||    
T  13638803 taaacctaatgcgtgactat 13638822  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 13646240 - 13646317
Alignment:
Q  146 ccccagcctgcaaattcaagccttacattttgtcatcttcttcgactaacattcaccttaaacctaatgtgtcactat 223  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| || |||||    
T  13646240 ccccagcctgcaaattcaagccttacattttgccatcttcttcaactaacattgaccttaaacctaatgcgtgactat 13646317  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 13646093 - 13646143
Alignment:
Q  5 taaaatggaccattgtccacaacagatcacatttttcattcaatctctatt 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  13646093 taaaatggaccattgtccacaccagatcacatttttcattcaatatctatt 13646143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 13638597 - 13638642
Alignment:
Q  4 ctaaaatggaccattgtc-cacaacagatcacatttttcattcaat 48  Q
    |||||||||||||||||  ||||||| |||||||||||||||||||    
T  13638597 ctaaaatggaccattgtgtcacaacatatcacatttttcattcaat 13638642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 31910338 - 31910387
Alignment:
Q  2 tgctaaaatggaccattgtccacaacagatcacatttttcattcaatctc 51  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  31910338 tgctaaaatggaccgtggtccgcaacagatcacatttttcattcaatctc 31910387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 31903004 - 31903049
Alignment:
Q  4 ctaaaatggaccattgtccacaacagatcacatttttcattcaatc 49  Q
    |||||||||||||| |||||||||||||| |||| |||||||||||    
T  31903004 ctaaaatggaccatggtccacaacagatcgcattattcattcaatc 31903049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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