View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_64 (Length: 239)
Name: NF6063_high_64
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_64 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 44703098 - 44702878
Alignment:
| Q |
13 |
aaaggcactatgtcaaaatttacttttatcttatagggatcagattccacaagtagttcaccaattttaaaaagagcataatctcacaggatgctgatgc |
112 |
Q |
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| T |
44703098 |
aaagtcactatgtcaaaatttacttttatcttatagggatcagattccacaagtagttcaccaattttaaaaagagcataatctcacaggatgctgatgc |
44702999 |
T |
|
| Q |
113 |
ggaaaagagaagcttcttcctgagcttaaattgtttgtctgcttcttcttgttacctaaact------------attcatgcttttcttcatgataagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
44702998 |
tgaaaagagaagcttcttcctgagcttaaattgtttgtctgcttcttctggttacctaaactattctccttcatattcatgcttttcttcatgataagtt |
44702899 |
T |
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| Q |
201 |
ggttaatagttaaggactaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44702898 |
ggttaatagttaaggactaac |
44702878 |
T |
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