View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_high_67 (Length: 238)

Name: NF6063_high_67
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_high_67
NF6063_high_67
[»] chr3 (3 HSPs)
chr3 (59-136)||(54620228-54620305)
chr3 (134-222)||(54620345-54620429)
chr3 (1-42)||(54620162-54620203)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 54620228 - 54620305
Alignment:
Q  59 ttctagcatcaattgtacatagacttgtgtcgaaatccggccatatgtggaccaaaatctaagccccattcattatta 136  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54620228 ttctagcatcaattgtacatggacttgtgtcgaaatccggccatatgtggaccaaaatctaagccccattcattatta 54620305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 54620345 - 54620429
Alignment:
Q  134 ttattagaacaacaatcttacttaattcagaagaaaacaactacaaataacataaacaaagagcaaatcatgtttgatcaccatatttg 222  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54620345 ttattagaacaacaatctta----attcagaagaaaacaactacaaataacataaacaaagagcaaatcatgtttgatcaccatatttg 54620429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54620162 - 54620203
Alignment:
Q  1 aaagacaaaggacactcacaagaaaaggaaaagacattaaca 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  54620162 aaagacaaaggacactcacaagaaaaggaaaagacattaaca 54620203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University