View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_76 (Length: 216)
Name: NF6063_high_76
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_76 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 8212131 - 8212271
Alignment:
| Q |
40 |
gataggggaaagacagtgttgatgagatgatttaatagataagactttgtgtattatgtcaaaaagagaatttaaaatgagtaattttaacgaaaactat |
139 |
Q |
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| T |
8212131 |
gatagggggaagacagtgtagatgagatgatttaatagataagactttgtgtattatgtcaaaaagagaatttaaaatgagtaattttaatgaaaactat |
8212230 |
T |
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| Q |
140 |
ttcannnnnnnaggcaaggagagagaacagacatcaacatg |
180 |
Q |
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| T |
8212231 |
ttcatttttttaggcaaggagagagaacagacatcaacatg |
8212271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 8233487 - 8233533
Alignment:
| Q |
97 |
gtcaaaaagagaatttaaaatgagtaattttaacgaaaactatttca |
143 |
Q |
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| T |
8233487 |
gtcaaaaagagaatttaaaatgagtaattttaacaaaaactatttca |
8233533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 8212295 - 8212323
Alignment:
| Q |
179 |
tggcaccccgcgaaacctccatcctatgc |
207 |
Q |
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| T |
8212295 |
tggcaccccgcgaaacctccatcctatgc |
8212323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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