View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_high_8 (Length: 484)
Name: NF6063_high_8
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 3640942 - 3641204
Alignment:
| Q |
5 |
gattatactaatcttactataatgtaatatctctgttacattgtatgaagtctgaacttactcctctctcccttttcaannnnnnnncttcatgttgtgc |
104 |
Q |
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| T |
3640942 |
gattatactaatcttactataatgtaatatctctgttacattgtatgaagtctgaacttactcctctctcccttttcaattttttttcttcatgttgtgc |
3641041 |
T |
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| Q |
105 |
agcatggaggtggacgggcgttcaaaactcttcaatggttagttcggagcaccgatgaagaaaggactttgatgggagctattgtagttgaagaaaaggc |
204 |
Q |
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| T |
3641042 |
agcatggaggtggacgggcgttcaaaactcttcaatggttagttcggagcaccgatgaagaaaggactttgatgggagctattgtagttgaagaaaaggc |
3641141 |
T |
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| Q |
205 |
cacgatatcacgtcacctgaagtcctgtgctttggagcgggatattcctattatggtaagtag |
267 |
Q |
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| T |
3641142 |
cacgatatcacgtcacctgaagtcctgtgctttggagcgggatattcctattatggtaagtag |
3641204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 316 - 470
Target Start/End: Original strand, 3641254 - 3641408
Alignment:
| Q |
316 |
gtaccaggaagaatgttattggtcgtgcattagcatgcttgagaattctgctctttataatgaatctctcatatgagagtgaggcataaatataattaag |
415 |
Q |
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| T |
3641254 |
gtaccaggaagaatgctattggtcgtgcattagcatgcttgagaattctgctctttataatgaatctctcatatgagagtgaggcataaatataattaag |
3641353 |
T |
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| Q |
416 |
ttctaaatatttatattccatccatgcaaatgatgagtatttcaattgttatatt |
470 |
Q |
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| T |
3641354 |
tcctaaatatttatattccatccatgcaaatgatgagtatttcaattgttatatt |
3641408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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